Could vsearch Standardize the otu table and calculate the relative abundance of phyla, class, order, family and genus.

torognes / vsearch

Versatile open-source tool for microbiome analysis

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Could vsearch Standardize the otu table and calculate the relative abundance of phyla, class, order, family and genus. #487

Open Statistic-Qin opened 2 years ago

Statistic-Qin commented 2 years ago

The first need in usearch is -otutab_norm function; the second need in usearch is sintax_summary function. Has the function not been developed in vsearch. Hope your answer. Thanks!

torognes commented 2 years ago

Thanks for your suggestion. We have not implemented these functions in vsearch yet.

Unfortunately, we have limited capacity to implement new features and we do not have any plans to implement these features at the moment.

Statistic-Qin commented 2 years ago

Thank you for your reply! Unfortunately, these functions are not available yet, but it is already very good and can solve many problems.

torognes commented 2 years ago

Seems like the usearch otutab_norm command is obsoleted and replaced by otutab_rare:

http://drive5.com/usearch/manual/cmd_otutab_rare.html

torognes commented 2 years ago

This issue is related to issue #465.