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torognes / vsearch

Versatile open-source tool for microbiome analysis
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sintax: should the command accept the --minseqlength option? #494

Closed frederic-mahe closed 2 years ago

frederic-mahe commented 2 years ago

vsearch --sintax does not accept that option, and filters out sequences shorter than 32 nucleotides.

torognes commented 2 years ago

The option should be accepted. Will fix.

torognes commented 2 years ago

Fixed in commit b83e8b7797ad05ede4928e7e8216b6bbb1badf8a. Both the minseqlength and the maxseqlength option is allowed now.

torognes commented 2 years ago

Fixed in version 2.21.2, which has been released. Unfortunately I forgot to mention this in the release description.