Hi, I've got the following error saying " object 'tickvals' not found".
I can actually obtain the picture in png format already, but cannot generate an interactive html figure.
Maybe something wrong with related packages?
Thanks very much in advance.
Best, Tao
(base) [zhaot@alice dotplot]$ pafCoordsDotPlotly.R -i hf.genome_flye.minimap2.paf -o hf.genome_flye.minimap2.paf.plot -m 4000 -q 500000 -k 17 -s -t -l -p 20
Warning message:
package ‘ggplot2’ was built under R version 3.6.3
PARAMETERS:
input (-i): hf.genome_flye.minimap2.paf
output (-o): hf.genome_flye.minimap2.paf.plot
minimum query aggregate alignment length (-q): 5e+05
minimum alignment length (-m): 4000
plot size (-p): 20
show horizontal lines (-l): TRUE
number of reference chromosomes to keep (-k): 17
show % identity (-s): TRUE
show % identity for on-target alignments only (-t): TRUE
produce interactive plot (-x): TRUE
reference IDs to keep (-r):
Number of alignments: 107664
Number of query sequences: 3193
After filtering... Number of alignments: 29582
After filtering... Number of query sequences: 993
Error in eval(substitute(expr), data, enclos = parent.frame()) :
object 'tickvals' not found
Calls: ggplotly ... lapply -> FUN -> with -> with.default -> eval -> eval
No traceback available
Hi, I've got the following error saying " object 'tickvals' not found". I can actually obtain the picture in png format already, but cannot generate an interactive html figure. Maybe something wrong with related packages? Thanks very much in advance. Best, Tao