When I aligned two maize genomes, the paf file contained incomplete lines that will convert numeric columns to characters, then the script crashed becasue it was not expecting characters. I converted numeric columns to numeric type and removed NA-contained rows. I also removed unused columns in the alignment data frame to avoid errors.
When I aligned two maize genomes, the paf file contained incomplete lines that will convert numeric columns to characters, then the script crashed becasue it was not expecting characters. I converted numeric columns to numeric type and removed NA-contained rows. I also removed unused columns in the
alignmentdata frame to avoid errors.