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tpoorten / dotPlotly

Generate an interactive dot plot from mummer or minimap alignments
MIT License
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failed to create a plot #6

Open lvbakker opened 3 years ago

lvbakker commented 3 years ago

Hi, I installed dotploty and i am trying to run the examples provided. But both the minimap2 and the nucmer example seem to have some issues.

minimap2_failed_output.txt mummer_failed_output.txt

What am i missing here? Can someone help me with this? thank you

haneenih7 commented 3 years ago

I am getting the same error. it's so disappointing to see the issue is open since November and has not been solved.

gconcepcion commented 2 years ago

FYI - I had this same error and it was caused by having improper character in my sample names. In my case it was a # sign.

Solved the problem with a simple substitution sed -is 's/#/_/g' input.paf

briannadon commented 2 years ago

confirming I had this same problem and a "#" in my sample names was the culprit, thanks for your answer @gconcepcion . Perhaps a warning in the README telling people to be very careful that their sample has no special characters in the name is in order!