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tprodanov / parascopy

Copy number estimation and variant calling for duplicated genes using WGS.
MIT License
22 stars 3 forks source link

Analyze non-human genomes #10

Closed yukixuen closed 2 months ago

yukixuen commented 3 months ago

Hello,

Excellent work! I would like to use your helpful tool for the rhesus genome (Mmul10). In the FAQs, I noticed that a set of non-duplicated windows should be constructed for parascopy depth to calculate background read depth. Could you provide more details? I would greatly appreciate it if the complete code for the pipeline could be provided.

yukixuen commented 3 months ago

Sorry, I just found the closed issues for the similar topic. Thank you so much again.