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tprodanov / parascopy

Copy number estimation and variant calling for duplicated genes using WGS.
MIT License
22 stars 3 forks source link

Non-human genomes #12

Open quantrannnn opened 1 week ago

quantrannnn commented 1 week ago

Hi @tprodanov, Thank you for creating this tool. I want to try it for the cattle genome. Could you show me the format of the BED file for the parascopy depth command? Is the bin size 100 bp? Thank you.

tprodanov commented 1 week ago

Hi! Thank you for using our tool! Regarding non-human genome, you can check out this comment, also maybe something from this thread will help you as well.

Please write if this does not really answer your question or if you have more questions!

Best regards, Timofey