Error in conda env with numpy

tprodanov / parascopy

Copy number estimation and variant calling for duplicated genes using WGS.

MIT License

22 stars 3 forks source link

Error in conda env with numpy #3

Closed pabloangulo7 closed 1 year ago

pabloangulo7 commented 1 year ago

Hello,

I have an error when I run the command: parascopy table -i pretable.bed.gz -f genome.fasta -o table.bed.gz It seems the error is related with numpy and a deprecated function in the new version.

I am running the program in a conda environment created with: conda create --name paras_env parascopy conda activate paras_env

Could you tell me what is causing the error and how to fix it?

Thanks in advance

Pablo

error

tprodanov commented 1 year ago

Hi Pablo,

Thank you for using Parascopy. Yes, seems like np.bool was deprecated. I replaced it with np.bool_ in a new release, but it may take a couple days to update on bioconda. Otherwise, you can clone this repository and run python setup.py develop --no-deps.

Best regards, Timofey