TrackMate Batcher not working

[bpavie]

Hi,

On a freshly new installed Fiji today, just updated and with the following extra plugins installed:

• TrackMate-Cellpose
• TrackMate-ExTrack
• TrackMate-Helper
• TrackMate-Ilastik
• TrackMate-MorphoLibJ
• TrackMate-Oneat
• TrackMate-Pairing
• TrackMate-StarDist
• TrackMate-Weka
• TrackMateCSVImporter
• CellTrackingChallenge

On the following system:

• ImageJ version : 1.54f
• Windows 10 Pro with the following jars installed in Fiji.app\jars:
• TrackMate-7.11.1.jar
• TrackMate-Cellpose-0.1.1.jar
• TrackMate-CSVImporter-3.1.3.jar
• TrackMate-CTCRunner-1.2.4.jar
• TrackMate-ExTrack-1.3.0.jar
• TrackMate-Ilastik-1.3.2.jar
• TrackMate-MorphoLibJ-1.2.0.jar
• TrackMate-StarDist-1.2.0.jar
• TrackMate-Weka-1.3.0.jar

When I try to start TrackMate Batcher via the menu Plugins › Tracking › TrackMate Batcher, I get the following error:

[ERROR] Command errored: TrackMate Batcher
java.io.UncheckedIOException: java.nio.charset.MalformedInputException: Input length = 1
    at java.io.BufferedReader$1.hasNext(BufferedReader.java:574)
    at java.util.Iterator.forEachRemaining(Iterator.java:115)
    at java.util.Spliterators$IteratorSpliterator.forEachRemaining(Spliterators.java:1801)
    at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482)
    at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:472)
    at java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
    at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
    at java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:566)
    at fiji.plugin.trackmate.batcher.ui.BatcherModelIO.readFrom(BatcherModelIO.java:89)
    at fiji.plugin.trackmate.batcher.ui.BatcherModelIO.readFromDefault(BatcherModelIO.java:114)
    at fiji.plugin.trackmate.batcher.ui.BatcherController.<init>(BatcherController.java:65)
    at fiji.plugin.trackmate.batcher.TrackMateBatcherPlugin.run(TrackMateBatcherPlugin.java:36)
    at ij.IJ.runUserPlugIn(IJ.java:244)
    at ij.IJ.runPlugIn(IJ.java:210)
    at ij.IJ.runPlugIn(IJ.java:199)
    at net.imagej.legacy.command.LegacyCommand.run(LegacyCommand.java:57)
    at org.scijava.command.CommandModule.run(CommandModule.java:196)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:750)
Caused by: java.nio.charset.MalformedInputException: Input length = 1
    at java.nio.charset.CoderResult.throwException(CoderResult.java:281)
    at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:339)
    at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
    at java.io.InputStreamReader.read(InputStreamReader.java:184)
    at java.io.BufferedReader.fill(BufferedReader.java:161)
    at java.io.BufferedReader.readLine(BufferedReader.java:324)
    at java.io.BufferedReader.readLine(BufferedReader.java:389)
    at java.io.BufferedReader$1.hasNext(BufferedReader.java:571)
    ... 24 more
[INFO] Reading available sites from https://imagej.net/
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
    at javax.swing.JTable.columnMarginChanged(JTable.java:4599)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:109)
    at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:235)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:233)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:233)
    at java.awt.Dialog.show(Dialog.java:1084)
    at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:869)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:666)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:637)
    at net.imagej.ui.swing.updater.SwingTools.lambda$showMessageBox$0(SwingTools.java:240)
    at net.imagej.ui.swing.updater.SwingTools.invokeOnEDT(SwingTools.java:288)
    at net.imagej.ui.swing.updater.SwingTools.showMessageBox(SwingTools.java:236)
    at net.imagej.ui.swing.updater.SitesDialog.error(SitesDialog.java:688)
    at net.imagej.ui.swing.updater.SitesDialog$1$1.stopCellEditing(SitesDialog.java:154)
    at javax.swing.JTable.columnMarginChanged(JTable.java:4598)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:109)
    at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:235)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:233)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:233)
    at java.awt.Dialog.show(Dialog.java:1084)
    at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:869)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:666)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:637)
    at net.imagej.ui.swing.updater.SwingTools.lambda$showMessageBox$0(SwingTools.java:240)
    at net.imagej.ui.swing.updater.SwingTools.invokeOnEDT(SwingTools.java:288)
    at net.imagej.ui.swing.updater.SwingTools.showMessageBox(SwingTools.java:236)
    at net.imagej.ui.swing.updater.SitesDialog.error(SitesDialog.java:688)
    at net.imagej.ui.swing.updater.SitesDialog$1$1.stopCellEditing(SitesDialog.java:154)
    at javax.swing.JTable.columnMarginChanged(JTable.java:4598)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:109)
    at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:235)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:233)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:233)
    at java.awt.Dialog.show(Dialog.java:1084)
    at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:869)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:666)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:637)
    at net.imagej.ui.swing.updater.SwingTools.lambda$showMessageBox$0(SwingTools.java:240)
    at net.imagej.ui.swing.updater.SwingTools.invokeOnEDT(SwingTools.java:288)
    at net.imagej.ui.swing.updater.SwingTools.showMessageBox(SwingTools.java:236)
    at net.imagej.ui.swing.updater.SitesDialog.error(SitesDialog.java:688)
    at net.imagej.ui.swing.updater.SitesDialog$1$1.stopCellEditing(SitesDialog.java:154)
    at javax.swing.JTable.columnMarginChanged(JTable.java:4598)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
    at javax.swing.JTable.columnMarginChanged(JTable.java:4599)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:109)
    at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:235)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:233)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:233)
    at java.awt.Dialog.show(Dialog.java:1084)
    at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:869)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:666)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:637)
    at net.imagej.ui.swing.updater.SwingTools.lambda$showMessageBox$0(SwingTools.java:240)
    at net.imagej.ui.swing.updater.SwingTools.invokeOnEDT(SwingTools.java:288)
    at net.imagej.ui.swing.updater.SwingTools.showMessageBox(SwingTools.java:236)
    at net.imagej.ui.swing.updater.SitesDialog.error(SitesDialog.java:688)
    at net.imagej.ui.swing.updater.SitesDialog$1$1.stopCellEditing(SitesDialog.java:154)
    at javax.swing.JTable.columnMarginChanged(JTable.java:4598)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:109)
    at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:235)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:233)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:233)
    at java.awt.Dialog.show(Dialog.java:1084)
    at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:869)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:666)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:637)
    at net.imagej.ui.swing.updater.SwingTools.lambda$showMessageBox$0(SwingTools.java:240)
    at net.imagej.ui.swing.updater.SwingTools.invokeOnEDT(SwingTools.java:288)
    at net.imagej.ui.swing.updater.SwingTools.showMessageBox(SwingTools.java:236)
    at net.imagej.ui.swing.updater.SitesDialog.error(SitesDialog.java:688)
    at net.imagej.ui.swing.updater.SitesDialog$1$1.stopCellEditing(SitesDialog.java:154)
    at javax.swing.JTable.columnMarginChanged(JTable.java:4598)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
    at javax.swing.JTable.columnMarginChanged(JTable.java:4599)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:109)
    at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:235)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:233)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:233)
    at java.awt.Dialog.show(Dialog.java:1084)
    at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:869)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:666)
    at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:637)
    at net.imagej.ui.swing.updater.SwingTools.lambda$showMessageBox$0(SwingTools.java:240)
    at net.imagej.ui.swing.updater.SwingTools.invokeOnEDT(SwingTools.java:288)
    at net.imagej.ui.swing.updater.SwingTools.showMessageBox(SwingTools.java:236)
    at net.imagej.ui.swing.updater.SitesDialog.error(SitesDialog.java:688)
    at net.imagej.ui.swing.updater.SitesDialog$1$1.stopCellEditing(SitesDialog.java:154)
    at javax.swing.JTable.columnMarginChanged(JTable.java:4598)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
    at javax.swing.JTable.columnMarginChanged(JTable.java:4599)
    at javax.swing.table.DefaultTableColumnModel.fireColumnMarginChanged(DefaultTableColumnModel.java:628)
    at javax.swing.table.DefaultTableColumnModel.propertyChange(DefaultTableColumnModel.java:691)
    at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
    at javax.swing.event.SwingPropertyChangeSupport.firePropertyChange(SwingPropertyChangeSupport.java:92)
    at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:278)
    at javax.swing.table.TableColumn.firePropertyChange(TableColumn.java:284)
    at javax.swing.table.TableColumn.setWidth(TableColumn.java:514)
    at javax.swing.JTable$2.setSizeAt(JTable.java:3235)
    at javax.swing.JTable$4.setSizeAt(JTable.java:3316)
    at javax.swing.JTable.adjustSizes(JTable.java:3361)
    at javax.swing.JTable.adjustSizes(JTable.java:3329)
    at javax.swing.JTable.setWidthsFromPreferredWidths(JTable.java:3243)
    at javax.swing.JTable.doLayout(JTable.java:3131)
    at java.awt.Container.validateTree(Container.java:1698)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validateTree(Container.java:1707)
    at java.awt.Container.validate(Container.java:1633)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:711)
    at javax.swing.RepaintManager$3.run(RepaintManager.java:709)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at javax.swing.RepaintManager.validateInvalidComponents(RepaintManager.java:708)
    at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1731)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Resulting in beeing able to start the TrackMate Batch processing interface

Any tips?

Best, Benjamin

[tinevez]

Hello @bpavie Looks like a corrupted serialization of the settings. Can you check the files you have in your ~/.trackmate folder? There should be a JSON file for the batcher. Does the error persist if you move it away? If yes, please send it :)

[bpavie]

Hi @tinevez

Removing the directory solved the problem, thanks a lot!