Rename column names (apc_name and taxonomic_status_of_aligned_name)

traitecoevo / APCalign

R package for accessing, matching and updating species names of Australian flora

https://traitecoevo.github.io/APCalign/

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Closed fontikar closed 1 year ago

fontikar commented 1 year ago

accepted_name (no authorship), and also display scientific_name (with authorship) in the output table of create_taxonomic_update_lookup

fontikar commented 1 year ago

Might also be a good time to also rename taxonomic_status_of_aligned_name to update_reason

ehwenk commented 1 year ago

I think we have to retain the term taxonomic_status (in some capacity) - that is an official taxonomic term (https://dwc.tdwg.org/terms/#dwc:taxonomicStatus)

wcornwell commented 1 year ago

what about full = TRUE retains the APC terminology exactly and full=FALSE uses

   original_name,
        aligned_name,
        updated_name = canonical_name,
        aligned_reason,
        updated_reason = taxonomicStatusClean

???

wcornwell commented 1 year ago

APC column names in this context are:

wcornwell commented 1 year ago

should i add scientificNameAuthorship to full = FALSE ?