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traitecoevo / hmde

Implementation of hierarchical Bayesian longitudinal models to estimate differential equation parameters.
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Dependencies load order overwriting dplyr #35

Closed Tess-LaCoil closed 2 months ago

Tess-LaCoil commented 2 months ago 
Warning messages:
1: replacing previous import ‘dplyr::lag’ by ‘stats::lag’ when loading ‘hmde’ 
2: replacing previous import ‘dplyr::filter’ by ‘stats::filter’ when loading ‘hmde’

Warning message appears when load_all() is used.

Tess-LaCoil commented 2 months ago 
W  checking whether package 'hmde' can be installed (5m 58.8s)
   Found the following significant warnings:
     Warning: replacing previous import 'dplyr::lag' by 'stats::lag' when loading 'hmde'
     Warning: replacing previous import 'dplyr::filter' by 'stats::filter' when loading 'hmde'

Also occurs in rcmdcheck()

dfalster commented 2 months ago

I'm not seeing these at my end. Nor are they appearing in the tests on github. the only that comes up are some "NOTES", that are being address via #38

See https://github.com/traitecoevo/hmde/actions/runs/10280200189/job/28447022963#step:6:47

so I suspect these messages are appearing because of a way you've loaded packages in your local setup. I commonly see similar messages happen when I load dplyr, e.g.

> library(dplyr)

Attaching package: ‘dplyr’

The following object is masked from ‘package:testthat’:

    matches

The following objects are masked from ‘package:stats’:

    filter, lag

You have the reverse. So perhaps you already had dplyr loaded, then reloaded stats?

I dunno sorry.

Try cloning from GitHub into a new directory and opening a new R session then running checks. Does it happen then? If not, it's something to do with contents of your local copy.