Closed dfalster closed 9 years ago
Failing with installation of RccpEigen, which is required by rstan
RccpEigen
Rscript -e 'dockertest::build()' ... * installing *source* package ‘RcppEigen’ ... ** package ‘RcppEigen’ successfully unpacked and MD5 sums checked ** libs g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I../inst/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppEigen.cpp -o RcppEigen.o g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I../inst/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fastLm.cpp -o fastLm.o g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o RcppEigen.so RcppEigen.o fastLm.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lgfortran collect2: error: ld returned 1 exit status /usr/share/R/share/make/shlib.mk:6: recipe for target 'RcppEigen.so' failed make: *** [RcppEigen.so] Error 1 ERROR: compilation failed for package ‘RcppEigen’ * removing ‘/usr/local/lib/R/site-library/RcppEigen’ Error in install.packages(pkgs = opt$PACKAGES, lib = opt$libloc, repos = opt$repos, : installation of package ‘RcppEigen’ had non-zero exit status INFO[0145] The command [/bin/sh -c install2.r --error devtools inline RcppEigen RcppRedis] returned a non-zero code: 1 Error in docker_build(path, dockerfile, info$tagname, use_cache) : Error running docker Calls: <Anonymous> -> docker_build Execution halted
Failing with installation of
RccpEigen
, which is required by rstan