In contrast to Daniel's implementation, the survival during germination is not yet applied to the seed output. I suspect we'll sort this out during the fitness calculations, but this is something to be aware of.
I think I'm actually in favour of never using Pi_0 within the CohortTop, because it can't know that number, as it's a Patch-specific quantity. We just need to make sure that we deal with it later. So during post-processing make sure that calculation happens, and recognise that seed output recorded in CohortTop is pre dispersal.
In contrast to Daniel's implementation, the survival during germination is not yet applied to the seed output. I suspect we'll sort this out during the fitness calculations, but this is something to be aware of.
I think I'm actually in favour of never using
Pi_0
within theCohortTop
, because it can't know that number, as it's aPatch
-specific quantity. We just need to make sure that we deal with it later. So during post-processing make sure that calculation happens, and recognise that seed output recorded inCohortTop
is pre dispersal.