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traitecoevo / taxonlookup

A versioned and dynamically updating taxonomic lookup table for land plants
http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12517/abstract
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Duplicated genera #2

Closed richfitz closed 9 years ago

richfitz commented 9 years ago

There's a bunch of duplicated genera that have conflicting lookups:

d <- remake::make("lookupFixed")
dups <- unique(d$genus[duplicated(d$genus)])
dd <- d[d$genus %in% dups, ]
dd <- dd[order(dd$genus), ]

e.g.:

               genus            family          order
7598      Acetosella      Polygonaceae Caryophyllales
16943     Acetosella       Oxalidaceae     Oxalidales
13371         Adelia          Oleaceae       Lamiales
14550         Adelia     Euphorbiaceae   Malpighiales
5823        Alliaria      Brassicaceae    Brassicales
20494       Alliaria         Meliaceae     Sapindales
6894    Anacampseros Anacampserotaceae Caryophyllales
21088   Anacampseros      Crassulaceae   Saxifragales
17481      Arthraxon           Poaceae         Poales
20054      Arthraxon      Loranthaceae     Santalales
252      Asteriscium          Apiaceae        Apiales
2958     Asteriscium        Asteraceae      Asterales
14452    Atomostigma  Chrysobalanaceae   Malpighiales
19703    Atomostigma          Rosaceae        Rosales
wcornwell commented 9 years ago

Partially solved by excluding "unresolved" species from the plant list, but we need to also incorporate badGeneraFamilyPairs.csv hopefully will fully solve the problem