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transbioZI / Gimpute

An efficient genetic data imputation pipeline
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1_01_metaData.txt #2

Open HagenC opened 5 years ago

HagenC commented 5 years ago

Hi, In genotypeInfoUpdate.R.

line 920 - 924.

step 3 replace group IDs

metaDataFile <- "1_01_metaData.txt" 
outputPrefix3 <- "1_03_replacedGroupAndSex"
updateGroupIdAndSex(plink, inputPrefix=outputPrefix2, 
                    metaDataFile, outputPrefix=outputPrefix3)

The "metaDataFile <- "1_01_metaData.txt"" is overwriting the naming of the metaData file, so we are forced to name the metadata file "1_01_metaData.txt".

It would be nice if you could remove the line, so we can name the metadata file!

Cheers, Christian

Junfang commented 5 years ago

Hi Christian,

Many thanks for your comment. I've removed the redundant line.

Best, Junfang