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samsa2
SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.
GNU General Public License v3.0
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SAMSA2 wrapper for Galaxy
#36
mushalallam
opened
5 years ago
1
error with DIAMOND_subsystems_analysis_counter.py
#35
sudeep71
closed
5 years ago
1
Including locusTags alongwith gene names
#34
microsud
opened
5 years ago
0
problems running "test_of_master_script_tiny.bash"
#33
tony-travis
closed
5 years ago
1
Fail to install R 3.0 Ubuntu 16.04LTS
#32
wxp16
closed
2 years ago
2
Errors in master_script_preserving_unmerged.sh and combining_unmerged.R
#31
callumjethomas
closed
5 years ago
6
Showing error in diamond subsystem analysis
#30
amit19bik
closed
5 years ago
2
IndexElist index out of rangerror:
#29
sghignone
closed
5 years ago
1
Checkpoint update
#28
transcript
closed
5 years ago
0
Bad operand protections - DIAMOND_specific_organism_retriever.py can be overwritten when calling it
#27
jfvorwald
opened
5 years ago
2
run_DESeq_stats error
#26
billytaj
closed
5 years ago
1
adding a checkpoint file
#25
seb951
closed
5 years ago
0
install errors
#24
billytaj
closed
5 years ago
1
Docker/Singularity image?
#23
onertipaday
opened
5 years ago
5
Update make_DESeq_heatmap.R
#22
pjtorres
closed
5 years ago
0
trimming for adaptors
#21
seb951
closed
5 years ago
1
meaning behind "checked" in test script demo
#20
billytaj
closed
5 years ago
1
Update diversity_graphs.R
#19
pjtorres
closed
6 years ago
0
Update make_combined_graphs.R script to also work with Subsystems input
#18
transcript
opened
6 years ago
0
Normalize based on gene length?
#17
transcript
opened
6 years ago
2
Truncated names in RefSeq organism results
#16
rachaellappan
closed
6 years ago
1
SEED Subsystems: level 4 category does not always share the same higher level categories
#15
rachaellappan
closed
5 years ago
2
From @utpalh: code problems
#14
transcript
closed
6 years ago
1
Kaedenn improvements
#13
transcript
closed
6 years ago
0
Incorporating improvements from Kaedenn, many programming updates
#12
transcript
closed
6 years ago
0
snakemake implementation of samsa2 pipeline
#11
wresch
closed
6 years ago
3
make_DESeq_heatmap.R
#10
seb951
closed
6 years ago
1
Code problems
#9
iquasere
closed
6 years ago
10
make_combined_graphs.R
#8
seb951
closed
6 years ago
1
diversity_stats.R
#7
seb951
closed
6 years ago
1
make_DESeq_PCA.R
#6
seb951
closed
6 years ago
1
Trim and merge OR merge and trim?
#5
memoll
closed
6 years ago
2
Different database?
#4
rachaelantwis
closed
6 years ago
9
Where is the File 2 (R2) or reverse file in the script?
#3
camilleberrocal
closed
6 years ago
2
minor bug in master_script_for_sample_files.bash
#2
seb951
closed
6 years ago
3
Step 5
#1
rachaelantwis
closed
6 years ago
4
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