transit-chd brain-structural-pipeline issues - Githubissues

transit-chd / brain-structural-pipeline

slice-to-volume reconstruction and tissue segmentation for T2-weighted fetal and neonatal brain MRI

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add logging of stdout to file

#16 jfpva opened 3 months ago
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Volume calculations

#15 juliacosma opened 3 months ago
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add calculation of total and regional brain volumes

#14 jfpva opened 6 months ago
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Closes #3 add functionality to parse input parameters

#13 jfpva closed 6 months ago
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File Viewer Function

#12 juliacosma closed 6 months ago
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parse input arguments before validating paths in pipeline script

#11 jfpva closed 6 months ago
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generate viewer file

#10 jfpva closed 6 months ago
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add simple metric(s) to automatically flag low-quality SVR output

#9 jfpva opened 6 months ago
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add neonatal segmentation pipeline

#8 jfpva opened 6 months ago
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add functionality to allow selective user-specified override of automated SVR

#7 jfpva opened 6 months ago
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SVR resolution

#6 jfpva opened 6 months ago
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infer slice thickness from stacks

#5 jfpva opened 6 months ago
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allow user to define input files, output and temp directory paths as input arguments

#4 jfpva opened 6 months ago
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add functionality to parse named and flag input parameters

#3 jfpva closed 6 months ago
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make bias correction of t2-weighted volume optional

#2 jfpva opened 6 months ago
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move bias correction of input stacks to preprocessing script

#1 jfpva opened 6 months ago
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