mrikasper
commented
1 year ago Dear Sarah,
Thank you for trying out PhysIO. You will have to install the signal processing and the statistics toolbox of Matlab in order to use PhysIO’s full functionality. Have a look at the Requirements file mentioned in the README.
Your error message already gives you some indication about that:
Error using tapas_physio_log tapas_physio_findpeaks_compatible is no longer distributed with this toolbox. Instead, we rely on the "findpeaks" function included in Matlab's Signal Processing Toolbox.
I hope that helps!
All the best, Lars
Dear TAPAS Team,
I hope all is well. I am a PhD student interested in using your tool to extract heart data data from Philips and GE machines in order to assess heart rate variability during task. I have installed TAPAS and its dependencies as outlined here: https://github.com/translationalneuromodeling/tapas/blob/master/PhysIO/README.md
However, when running the example outlined, I do obtain a figure but I also run into the below errors.: philips_ecg3t_matlab_script Error using tapas_physio_log tapas_physio_findpeaks_compatible is no longer distributed with this toolbox. Instead, we rely on the "findpeaks" function included in Matlab's Signal Processing Toolbox.
Error in tapas_physio_findpeaks (line 43) tapas_physio_log(sprintf(...
Error in tapas_physio_rescale_gradient_gain_fluctuations (line 64) [~, idxGainPlus] = tapas_physio_findpeaks((dmG), 'minpeakDistance', n, ...
Error in tapas_physio_create_scan_timing_from_gradients_philips (line 175) tapas_physio_rescale_gradient_gain_fluctuations(...
Error in tapas_physio_create_scan_timing (line 83) tapas_physio_create_scan_timing_from_gradients_philips( ...
Error in tapas_physio_main_create_regressors (line 165) [ons_secs, VOLLOCS, LOCS, verbose] = tapas_physio_create_scan_timing(...
Error in philips_ecg3t_matlab_script (line 75) physio = tapas_physio_main_create_regressors(physio);
Could you kindly provide assistance? I use a Mac.
Many thanks! Sarah