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trashbirdecology / bbsAssistant

An R package for downloading and handling data and information from the North American Breeding Bird Survey.
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get_species fails #83

Closed chrischizinski closed 4 years ago

chrischizinski commented 4 years ago

spp.lists <- get_species(data.dir=bbsDir)

Error: trying URL 'https://www.birdpop.org/docs/misc/IBPAOU.zip' Content type 'application/zip' length 46428 bytes (45 KB)

downloaded 45 KB

Warning in file.rename(from = aou.unzip.path, to = paste0(data.dir, "aou_alpha.txt")) : cannot rename file '/Users/cchizinski2/Documents/git/bbsAssistant/raw-data/list19p.csv' to '/Users/cchizinski2/Documents/git/bbsAssistant/raw-data/aou_alpha.txt', reason 'No such file or directory' Warning in file(file, "rt") : cannot open file '/Users/cchizinski2/Documents/git/bbsAssistant/raw-data/aou_alpha.txt': No such file or directory Error in file(file, "rt") : cannot open the connection

sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Mojave 10.14.6

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] dplyr_0.8.3 bbsAssistant_1.0.0

loaded via a namespace (and not attached): [1] Rcpp_1.0.3 pillar_1.4.2 compiler_3.6.1 prettyunits_1.0.2 remotes_2.1.0 tools_3.6.1 testthat_2.3.0 digest_0.6.23 pkgbuild_1.0.6
[10] pkgload_1.0.2 tibble_2.1.3 memoise_1.1.0 evaluate_0.14 pkgconfig_2.0.3 rlang_0.4.2 cli_1.1.0 rstudioapi_0.10 curl_4.2
[19] yaml_2.2.0 xfun_0.11 withr_2.1.2 knitr_1.26 desc_1.2.0 fs_1.3.1 devtools_2.2.1 tidyselect_0.2.5 rprojroot_1.3-2
[28] glue_1.3.1 here_0.1 R6_2.4.1 processx_3.4.1 rmarkdown_1.16 sessioninfo_1.1.1 purrr_0.3.3 callr_3.3.2 magrittr_1.5
[37] backports_1.1.5 ps_1.3.0 ellipsis_0.3.0 htmltools_0.4.0 usethis_1.5.1 assertthat_0.2.1 crayon_1.3.4

trashbirdecology commented 4 years ago

Thanks for finding this bug. I fixed this (see get_species.R):