Open DrownedMala opened 2 weeks ago
@DrownedMala Thanks for opening this issue!
I did notice people might have different html outputs. Could you share your plotly version and your OS? And I assume you justed used the default parameters for Olivar?
My plotly version is 5.24.1
.
OS is Ubuntu 20.04.6 LTS
.
Yes, I did run it with default parameters, changing only temperature… But I've also tried leaving temperature as default, and it doesn't change the resulting HTML.
By the way, previous versions of olivar
did display the primers correctly.
Hello devs, as suggested in issue #13, I'm opening a new issue for the absence of graphical primers in the HTML output of
olivar tiling
. Here I attach the screenshots from my last generated primers (of today): Full screenZoomed-in view: a primer should be seen starting at pos. 71
For reference, I used the
olivar-validate
python script with thesnps
module to build the variant file and ranolivar build
with default settings, using the eukar db from NCBI as background. Anyway, even by other means (different tools than theolivar-validate
), I still get no primers in the HTML file.Let me know if I can give you any further helpful info. Cheers, Simone
edit: In addition, let me attach the HTML output of
olivar-validate validate
for the same case: