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treangenlab / emu

MIT License
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Speedup EMU for long cDNA reads #16

Closed jodjo86 closed 3 months ago

jodjo86 commented 3 months ago

In the minimap2 documentation, it is recommended to add the -u f argument for for long cDNA reads. It is supposed to "speeds up alignment with slight improvement to accuracy". I haven't tested the accuracy but the speed is increased by 2-3x.

What do you think?

source: https://github.com/lh3/minimap2?tab=readme-ov-file#map-long-mrnacdna-reads

kdc10 commented 3 months ago

Sounds good to me! Thanks for updating the code and submitting a PR!

jodjo86 commented 3 months ago

Do you think it is possible to add the new version (3.4.6) to Bioconda?