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treangenlab
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komb
KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.
GNU General Public License v2.0
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General performance improvements
#12
nsapoval
opened
1 year ago
0
Replacing igraph with own graph implementation
#11
nsapoval
opened
1 year ago
5
Slightly improved performance for large datasets and dense graphs
#10
nsapoval
closed
1 year ago
0
Simplifying HUG to remove multi edges / self-loops
#9
kanaifu
closed
1 year ago
0
Adding trusses capability to master branch
#8
kanaifu
closed
1 year ago
0
Pull request for truss capability
#7
kanaifu
closed
1 year ago
0
Mt trusses
#6
kanaifu
closed
1 year ago
0
Adding GitHub action to compile and test
#5
nsapoval
closed
1 year ago
0
Removed hardcoded portion of the python wrapper
#4
kanaifu
closed
1 year ago
1
README updates for new version
#3
nsapoval
closed
1 year ago
0
Simplified CLI and improved performance with GGCAT and BWA MEM
#2
nsapoval
closed
1 year ago
0
Fix to support newer version of the igraph library
#1
nsapoval
closed
1 year ago
4