search

tri16cc / glu-genetics

Automatically exported from code.google.com/p/glu-genetics
Other
0 stars 0 forks source link

Error: No module named SffIO for seq.Newbler2SAM #12

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. run glu seq.Newbler2SAM
2.
3.

What is the expected output? What do you see instead?
Expected a SAM file, got an error

Well, that could have gone better.

Execution aborted due to a problem with the program input, parameters
supplied, an error in the program.  Please examine the error message below.
If the cause of the error is not clear, re-run your command with 'glu -v'
for more information.

Error: No module named SffIO

[Wed Mar 23 15:00:58 2011] Execution aborted due to a fatal error

What version of the product are you using? On what operating system?
Cloned latest release today and have latest BioPython on Ubuntu 10.1

Please provide any additional information below.

Original issue reported on code.google.com by n.r.str...@gmail.com on 23 Mar 2011 at 2:34

GoogleCodeExporter commented 9 years ago 
This was my mistake. I had the latest biopython from the Ubuntu repositories 
but that was out of date (152). Updating by installing from source (v156) 
solved the problem.

Original comment by n.r.str...@gmail.com on 23 Mar 2011 at 3:10