Open GoogleCodeExporter opened 9 years ago
$ hg tip changeset: 842:70dd90cbef02 tag: tip user: Kevin B. Jacobs <jacobs@bioinformed.com> date: Wed Jul 21 21:18:31 2010 -0400 summary: Add trimming for unaligned portions of reads. This is needed because many $ pip freeze Cython==0.12.1 Pyrex==0.9.9 numpy==1.4.1 wsgiref==0.1.2 $ python --version Python 2.6.2 $ python setup.py build running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "glu.lib._illumina" sources building extension "glu.lib.genolib.bitarrayc" sources building extension "glu.lib.genolib._genoarray" sources building extension "glu.modules.struct._admix" sources building extension "glu.modules.ld.pqueue" sources building extension "glu.modules.seq.samhelpers" sources pyrexc:> build/src.linux-x86_64-2.6/glu/modules/seq/samhelpers.c /home/james/glu/src/glu-genetics/glu/modules/seq/samhelpers.pyx:18:12: Syntax error in C variable declaration error: 1 errors while compiling 'glu/modules/seq/samhelpers.pyx' with Pyrex
Original issue reported on code.google.com by cas...@gmail.com on 23 Jul 2010 at 1:27
cas...@gmail.com
The pyx files are intended to work with Cython, not Pyrex. Sorry about the complexity of building GLU.
Original comment by bioinformed@gmail.com on 5 Aug 2010 at 5:56
bioinformed@gmail.com
Original issue reported on code.google.com by
cas...@gmail.com
on 23 Jul 2010 at 1:27