Expected output of verify_taxa.Rmd - Githubissues

trias-project / unified-checklist

🇧🇪 Global Register of Introduced and Invasive Species - Belgium

https://trias-project.github.io/unified-checklist/

MIT License

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Expected output of verify_taxa.Rmd #14

Closed peterdesmet closed 4 years ago

peterdesmet commented 5 years ago

File named taxa_after_verification.csv

[ ] key: same as in taxa.csv
[ ] scientificName: same as in taxa.csv
[ ] taxonID: same as in taxa.csv
[ ] datasetKey: same as in taxa.csv
[ ] ~~nameType: same as in taxa.csv~~
[ ] ~~issues: same as in taxa.csv~~
[ ] validDistribution: same as in taxa.csv
[ ] verifiedKey: same as in taxa.csv
[ ] bb_key = trias_verifiedKey
[ ] bb_scientificName: regarding trias_verifiedKey
[ ] bb_species: regarding trias_verifiedKey
[ ] bb_genus: regarding trias_verifiedKey
[ ] bb_family: regarding trias_verifiedKey
[ ] bb_order: regarding trias_verifiedKey
[ ] bb_class: regarding trias_verifiedKey
[ ] bb_phylum: regarding trias_verifiedKey
[ ] bb_kingdom: regarding trias_verifiedKey
[ ] bb_rank: regarding trias_verifiedKey
[ ] bb_speciesKey: regarding trias_verifiedKey
[ ] bb_taxonomicStatus: regarding trias_verifiedKey
[ ] ~~bb_acceptedKey: regarding trias_verifiedKey~~
[ ] ~~bb_acceptedName: regarding trias_verifiedKey~~

Note that trias_verifiedKey should only contain a single value. Taxa that are verified to multiple taxa should thus appear as multiple lines

damianooldoni commented 5 years ago

yes, modifying function trias::verify_taxa() in trias::verify_taxa.R is in my to-do-list.

damianooldoni commented 4 years ago

While screening issues where I am involved, I found this old one. Is this solved? I think so.

peterdesmet commented 4 years ago

Yes, the whole verify_taxa step has been handled.