Format for sources

[peterdesmet]

taxonRemarks for taxa

Lists the datasets considered for unifying information:

Sources considered for unifying information: https://DOI, https://DOI, https://DOI

Note: this is not the source for the taxon information (that would be GBIF Backbone taxonomy), but just extra information (hence why we put it in taxonRemarks)

Todo:

• [x] dwc_mapping.Rmd: add correct taxonRemarks format to taxa

Source for distribution, species profile, description

Includes the link to the specific checklist taxon that was used for this piece of information:

https://www.gbif.org/species/141264581: Nymphaea marliacea Marliac in Verloove F, Groom Q, Brosens D, Desmet P, Reyserhove L (2018). Manual of the Alien Plants of Belgium. Version 1.7. Botanic Garden Meise. Checklist dataset https://doi.org/10.15468/wtda1m

Todo:

• [x] get_taxa.Rmd: Remove "accessed via GBIF.org on xxxx-xx-xx." from citation and add as citation to checklists.csv
• [x] unify_information.Rmd: add sourceScientificName to distribution
• [x] unify_information.Rmd: add sourceScientificName to species profile
• [x] unify_information.Rmd: add sourceScientificName to description
• [x] dwc_mapping.Rmd: create small build_source_citation() function, taking the arguments taxonKey, scientificName, datasetCitation
• [x] dwc_mapping.Rmd: add correct source format to distribution
• [x] dwc_mapping.Rmd: add correct source format to species profile
• [x] dwc_mapping.Rmd: add correct source format to description

[LienReyserhove]

I already added the scientific names to distribution and species profile. However, not really sure what to do with the description here, as there is no taxonKey to link the scientific name to. I see that this is the consequnce of using distinct() here. I guess there's no way to link the scientificName to verificationKey, as we will harverst the accepted name from gbif then, right? Suggestions to use something different than distinct() in order to keep the taxonKey?

[peterdesmet]

Function created to add source:

https://github.com/trias-project/unified-checklist/blob/4b7605e0b5bf2c1a8a2f9a4e3e737c6a51818ff0/src/6_dwc_mapping.Rmd#L132-L135

All the rest is done, closing issue.