TriBITS: Transition to find_package(Python3) (TriBITSPub/TriBITS#610)

bartlettroscoe commented 1 month ago

This TriBITS snapshot primarily brings in change to TriBITS for transitioning to find_package(Python3):

TriBITSPub/TriBITS#610

This brings in other changes to TriBITS as well, primarily from the PRs:

TriBITSPub/TriBITS#608
TriBITSPub/TriBITS#617
TriBITSPub/TriBITS#616
TriBITSPub/TriBITS#615
TriBITSPub/TriBITS#611
TriBITSPub/TriBITS#614
TriBITSPub/TriBITS#613
TriBITSPub/TriBITS#609

(If you want to review changes in TriBITS, please review them in the native TriBITS PRs listed above.)

bartlettroscoe commented 1 month ago

FYI: I might make sense to add a Trilinos-level release note as well. This could just be a copy of the new entry from the tribits/CHANGELOG.md file.

bartlettroscoe commented 1 month ago

@trilinos/muelu, @sebrowne.,

FYI: This PR and every PR will be blocked from merging due to:

13524

trilinos-autotester commented 1 month ago

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

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Using Repos:

Repo: TRILINOS (bartlettroscoe/Trilinos)

Pull Request Author: bartlettroscoe

bartlettroscoe commented 1 month ago

I put on the label AT: WIP for now. I forgot to run the to-python3.sh script on Trilinos and make other adjustments for this change. I am testing locally. Once I get a local build to work, I will run on the PR testing again.

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - Error: Jenkins Jobs - A user has pushed a change to the PR before testing completed. NEW EVENT 'committed', ID C_kwDOAsJyMdoAKDFkNDNkMjg0OTFlYTBjMjYyNGJmMTQ0OTM1MWJhMmI5MWE4ZmQ3NTI... The Jenkins Jobs will be shutdown; Testing of this PR must occur again.

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 13523.

Wiki: How to Reproduce PR Testing Builds and Errors.

bartlettroscoe commented 1 month ago

I configured, built, and tested this locally with the PR GenConfig 'clang' build on an hpws machine and got:

100% tests passed, 0 tests failed out of 3372

Full test summary

``` 100% tests passed, 0 tests failed out of 3372 Subproject Time Summary: Adelus = 2147.74 sec*proc (57 tests) Amesos = 27.22 sec*proc (14 tests) Amesos2 = 13.59 sec*proc (13 tests) Anasazi = 172.10 sec*proc (77 tests) AztecOO = 16.76 sec*proc (17 tests) Belos = 364.99 sec*proc (172 tests) Compadre = 23.32 sec*proc (29 tests) Epetra = 51.00 sec*proc (64 tests) EpetraExt = 18.47 sec*proc (12 tests) Galeri = 5.45 sec*proc (11 tests) Ifpack = 74.79 sec*proc (48 tests) Ifpack2 = 116.78 sec*proc (101 tests) Intrepid = 235.05 sec*proc (143 tests) Intrepid2 = 311.40 sec*proc (202 tests) Isorropia = 9.78 sec*proc (6 tests) Kokkos = 218.18 sec*proc (37 tests) KokkosKernels = 50.13 sec*proc (24 tests) Krino = 52.54 sec*proc (1 test) ML = 66.37 sec*proc (34 tests) MiniTensor = 2.36 sec*proc (2 tests) MueLu = 711.86 sec*proc (134 tests) NOX = 205.73 sec*proc (111 tests) Panzer = 3640.38 sec*proc (239 tests) Phalanx = 19.32 sec*proc (39 tests) Piro = 1113.68 sec*proc (23 tests) ROL = 2085.00 sec*proc (214 tests) RTOp = 13.66 sec*proc (24 tests) SEACAS = 30.03 sec*proc (25 tests) STK = 83.12 sec*proc (27 tests) Sacado = 71.96 sec*proc (299 tests) Shards = 1.00 sec*proc (4 tests) ShyLU_DD = 125.70 sec*proc (70 tests) ShyLU_Node = 4.57 sec*proc (6 tests) Stokhos = 104.78 sec*proc (76 tests) Stratimikos = 61.31 sec*proc (48 tests) Teko = 164.01 sec*proc (19 tests) Tempus = 3439.41 sec*proc (178 tests) Teuchos = 158.29 sec*proc (148 tests) Thyra = 72.99 sec*proc (82 tests) Tpetra = 421.70 sec*proc (280 tests) TrilinosATDMConfigTests = 165.09 sec*proc (12 tests) TrilinosBuildStats = 4.34 sec*proc (2 tests) TrilinosCouplings = 77.42 sec*proc (24 tests) TrilinosFrameworkTests = 21.07 sec*proc (8 tests) TrilinosInstallTests = 326.11 sec*proc (5 tests) Triutils = 3.13 sec*proc (2 tests) Xpetra = 28.09 sec*proc (19 tests) Zoltan = 185.27 sec*proc (18 tests) Zoltan2 = 408.23 sec*proc (172 tests) Label Time Summary: ConvergenceTest = 5.97 sec*proc (3 tests) IntegrationTest = 13.67 sec*proc (17 tests) UtilityTest = 0.27 sec*proc (1 test) convergence = 5.97 sec*proc (3 tests) integration = 13.67 sec*proc (17 tests) kdtree = 3.40 sec*proc (8 tests) kokkos = 13.95 sec*proc (18 tests) manifold = 5.97 sec*proc (3 tests) nanoflann = 3.40 sec*proc (8 tests) staggered = 3.79 sec*proc (3 tests) utility = 0.27 sec*proc (1 test) vector = 3.10 sec*proc (4 tests) Total Test time (real) = 1179.46 sec ```

I am turning on PR testing again because I think this is ready to review and merge.

Local testing details

I used the driver script in: * https://gitlab-ex.sandia.gov/rabartl/run_trilinos_pr_builds/ On the machine `hpws0475`, I set up a source tree under: ``` /gpfs/rabartl/Trilinos.base/Trilinos/ ``` I then set up a build directory using: ``` $ cd /gpfs/rabartl/Trilinos.base/BUILDS/PR/ $ ls -l run_trilinos_pr_builds.py lrwxrwxrwx 1 rabartl rabartl 63 Jul 26 19:20 run_trilinos_pr_builds.py -> ../../Trilinos/run_trilinos_pr_builds/run_trilinos_pr_builds.py $ ./run_trilinos_pr_builds.py -r -p ALL_PACKAGES -f off -j 16 -t 12 --only-generate clang ================================= Running set of Trilinos PR builds ================================= Fri Oct 11 06:29:33 MDT 2024 *** *** Repo status and versions: *** Trilinos Src Dir: /gpfs/rabartl/Trilinos.base/Trilinos ------------------------------------------------------------------------------------------------------------ | ID | Repo Dir | Branch | Tracking Branch | C | M | ? | |----|----------------------------------|---------------------|--------------------------------|---|---|---| | 0 | Trilinos (Base) | tribits-610-python3 | rab-github/tribits-610-python3 | | | | | 1 | packages/framework/GenConfig | HEAD | | | | | | 2 | packages/framework/srn-ini-files | master | origin/master | | | | | 3 | TriBITS | master | github/master | | | | | 4 | TriBITS/TriBITSDoc | master | github/master | | | | | 5 | run_trilinos_pr_builds | master | origin/master | | | | ------------------------------------------------------------------------------------------------------------ (tip: to see a legend, pass in --dist-legend.) Repository versions: *** Base Git Repo: Trilinos 1d43d28491ea0c2624bf1449351ba2b91a8fd752 [Fri Oct 11 00:07:20 2024 -0600] ML: Replace PYTHONINTERP_FOUND with Python3_EXECUTABLE (TriBITSPub/TriBITS#610) *** Git Repo: packages/framework/GenConfig 924a08af66f0a0573b5dd1128179731489339aec [Wed Jun 15 15:55:48 2022 +0000] Merge branch 'del-gen-symlinks' into 'master' *** Git Repo: packages/framework/srn-ini-files a9c49cb543af3d8ef11a09b1bc19b5eb37c5021f [Tue Aug 13 13:09:40 2024 -0600] Merge branch 'rhel8-systems' into 'master' *** Git Repo: TriBITS 28a36351f6f8fcc59d47f10bb8f550e8bd46f308 [Thu Oct 10 16:38:48 2024 -0400] Merge pull request #608 from sebrowne/python3 *** Git Repo: TriBITS/TriBITSDoc da416ab9f414b8fb61b09cb9f9aa251bc9316ee6 [Tue Feb 6 18:00:30 2024 -0700] Fix small typo in punctuation *** Git Repo: run_trilinos_pr_builds b2396b0d0e575efb6df6807aee791ba559104235 [Thu Oct 10 23:49:33 2024 -0600] Update for current Trilinos PR builds as of 2024-10-11 Final set of builds: clang NOTE: Skipping running config, build, and test because --only-generate was passed in! Generating the build directory and scripts: clang full-build-name: 'rhel8_sems-clang-11.0.1-openmpi-4.0.5-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables' Fri Oct 11 06:29:47 MDT 2024 ``` I then configured, built, and run with: ``` $ time ./do-configure &> configure.out && time make &> make.out && time ctest -j16 &> ctest.out ; ~/mailmsg.py "Finsihed rhel8_sems-clang-11.0.1-openmpi-4.0.5-serial" real 4m56.367s user 0m55.121s sys 1m27.746s real 147m1.347s user 2105m44.289s sys 66m0.201s real 19m39.571s user 222m20.920s sys 18m6.071s echo "Message: Finsihed rhel8_sems-clang-11.0.1-openmpi-4.0.5-serial Machine: hpws0475 PWD: /gpfs/rabartl/Trilinos.base/BUILDS/PR/clang" | mailx -s "Finsihed rhel8_sems-clang-11.0.1-openmpi-4.0.5-serial" rabartl@sandia.gov $ grep "failed out of" ctest.out 100% tests passed, 0 tests failed out of 3372 ``` NOTE: I could have just run the build at the base level with: ``` $ ./run_trilinos_pr_builds.py -r -p ALL_PACKAGES -f off -j 16 -t 12 clang ```

bartlettroscoe commented 1 month ago

@sebrowne, @trilinos/framework, @trilinos/pytrilinos, @trilinos/pytrilinos2, @trilinos/compadre, @trilinos/epetraext, @trilinos/ifpack2, @trilinos/ifpack2, @trilinos/ml, @trilinos/muelu, @trilinos/rol, @trilinos/shylu,

This PR should be ready to review and merge.

A few notes:

It does not look like PyTrilinos or PyTrilinos2 is getting tested in the PR testing builds. And I don't have any way to test those changes.
I left the non-TriBITS CMake code alone and did not replace PYTHON_EXECUTABLE with Python3_EXECUTABLE.

trilinos-autotester commented 1 month ago

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

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trilinos-autotester commented 1 month ago

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CDash Test Results for PR# 13523.

trilinos-autotester commented 1 month ago

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging NO REVIEWS HAVE BEEN PERFORMED ON THIS PULL REQUEST!

trilinos-autotester commented 1 month ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

bartlettroscoe commented 1 month ago

FYI: I created a git pre-push hook script to detect commits that are not signed off so I avoid the hassle and wasted time and computing resources in pushing non-signed-off commits to a branch. See:

https://github.com/TriBITSPub/TriBITS/pull/620

And I rebased the commits to make them all signed off.

trilinos-autotester commented 1 month ago

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (bartlettroscoe/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 13523.

Wiki: How to Reproduce PR Testing Builds and Errors.

bartlettroscoe commented 1 month ago

There were to failed tests last PR test iteration which can be see here showing:

Site	Build Name	Test Name	Status	Time Status	Time	Proc Time	Details	Labels	Build Time	Processors
ascic0206	PR-13523-test-rhel8_sems-gnu-8.5.0-openmpi-4.1.6-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables-669	Intrepid2_unit-test_Shared_Polylib_test_01_Serial_DOUBLE_MPI_1	Failed	Passed	10m 80ms	10m 80ms	Completed (Timeout)		2024-10-11T14:56:27 MDT	1
ascic0206	PR-13523-test-rhel8_aue-gnu-12.1.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework-4626	TrilinosInstallTests_reduced_tarball	Failed	Passed	2m 2s 340ms	2m 2s 340ms	Completed (Failed)		2024-10-11T14:55:48 MDT	1

The test Intrepid2_unit-test_Shared_Polylib_test_01_Serial_DOUBLE_MPI_1 is a timeout.

The failing test TrilinosInstallTests_reduced_tarball is more troubling. That one if failing due to:

...

Final set of non-enabled top-level packages:  Gtest Kokkos Teuchos KokkosKernels RTOp Sacado MiniTensor Epetra Zoltan Shards Triutils EpetraExt Tpetra TrilinosSS Thyra Xpetra Isorropia AztecOO Galeri Amesos Pamgen Zoltan2Core Ifpack ML Belos Amesos2 Anasazi Ifpack2 Stratimikos Teko Intrepid Intrepid2 Compadre NOX MueLu Zoltan2Sphynx Zoltan2 Tempus Stokhos ROL Piro TrilinosCouplings TrilinosBuildStats TrilinosInstallTests 44

...

TEST_2: Pass criteria = Match all REGEX {Final set of non-enabled top-level packages:  0} [FAILED]

...

But what is strange is that that test passes in all of the other PR builds as shown in this query showing:

Site	Build Name	Test Name	Status	Time Status	Time	Proc Time	Details	Build Time	Processors
ascic0206	PR-13523-test-rhel8_aue-gnu-12.1.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework-4626	TrilinosInstallTests_reduced_tarball	Failed	Passed	2m 2s 340ms	2m 2s 340ms	Completed (Failed)	2024-10-11T14:55:48 MDT	1
ascic166	PR-13523-test-rhel8_sems-gnu-8.5.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables-668	TrilinosInstallTests_reduced_tarball	Passed	Passed	3m 45s 560ms	3m 45s 560ms	Completed	2024-10-11T14:54:38 MDT	1
ascic0206	PR-13523-test-rhel8_sems-gnu-8.5.0-openmpi-4.1.6-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables-669	TrilinosInstallTests_reduced_tarball	Passed	Passed	4m 11s 190ms	4m 11s 190ms	Completed	2024-10-11T14:56:27 MDT	1
ascicgpu051	PR-13523-test-rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables-666	TrilinosInstallTests_reduced_tarball	Passed	Passed	3m 57s 250ms	3m 57s 250ms	Completed	2024-10-11T14:57:12 MDT	1
ascic0193	PR-13523-test-rhel8_sems-gnu-8.5.0-openmpi-4.1.6-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables-618	TrilinosInstallTests_reduced_tarball	Passed	Passed	4m 45s 330ms	4m 45s 330ms	Completed	2024-10-11T14:58:07 MDT	1

So what is different about this aue build compared to the other sems builds?

bartlettroscoe commented 1 month ago

I seem to have some memory of a defect with that aue Python build so I will just select AT: RETEST and cross my fingers!

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (bartlettroscoe/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

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CDash Test Results for PR# 13523.

trilinos-autotester commented 1 month ago

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging NO REVIEWS HAVE BEEN PERFORMED ON THIS PULL REQUEST!

trilinos-autotester commented 1 month ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester commented 1 month ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester commented 1 month ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester commented 1 month ago

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ sebrowne ]!

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

bartlettroscoe commented 1 month ago

@sebrowne, @rppawlo, @ccober6,

This PR has passed testing and has an approved review (from @sebrowne). None of the package teams have provided a review yet. While I believe the changes to their packages are good, proper, and correct (for the use cases as I understand them), I have no idea if PyTrilinos or PyTrilinos2 works (because they are not tested). And I suspect that PyTrilinos will not work after this refactoring.

Should we go ahead and merge without additional reviews (and cross our fingers)?

trilinos-autotester commented 1 month ago

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

ccober6 commented 1 month ago

I believe PyTrilinos is not functioning at this point anyways (@cgcgcg ?), so I would not worry about it. As far as the other CODEOWNERS, they have had a week to review, so I would suggest moving forward with the merge.

trilinos / Trilinos