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MueLu: Tell aggregate export about Graph and Aggregates #13577

Closed maxfirmbach closed 1 week ago

maxfirmbach commented 2 weeks ago

@trilinos/muelu

Motivation

The export of the aggregates triggers the aggregation process several times. This MR fixes the issue by telling the aggregate export, which factory it should use for Graph and Aggregates.

@cgcgcg @jhux2

trilinos-autotester commented 2 weeks ago

Status Flag 'Pre-Test Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging NO INSPECTION HAS BEEN PERFORMED ON THIS PULL REQUEST! - This PR must be inspected by setting label 'AT: PRE-TEST INSPECTED'.

trilinos-autotester commented 2 weeks ago

Status Flag 'Pre-Test Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED by label AT: PRE-TEST INSPECTED! Autotester is Removing Label; this inspection will remain valid until a new commit to source branch is performed.

trilinos-autotester commented 2 weeks ago

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Using Repos:

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  • Branch: Set-factory-more-specifically-for-aggregate-export
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trilinos-autotester commented 2 weeks ago

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

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CDash Test Results for PR# 13577.


Wiki: How to Reproduce PR Testing Builds and Errors.

jhux2 commented 2 weeks ago
error ``` ======================================================== Xpetra::Parameters Linear algebra library: Tpetra Galeri::Xpetra::Parameters Matrix type: Elasticity3D Problem size: 1000 (10x10x10) Processor subdomains in x direction: 1 Processor subdomains in y direction: 1 Processor subdomains in z direction: 1 ======================================================== Galeri complete. ======================================================== verbosity = high number of equations = 3 coarse: max size = 500 multigrid algorithm = unsmoothed use kokkos refactor = 0 aggregation: type = uncoupled aggregation: drop scheme = classical aggregation: drop tol = 0 aggregation: export visualization data = 1 aggregation: output file: agg style = Convex Hulls aggregation: output file: fine graph edges = 0 aggregation: output file: coarse graph edges = 0 aggregation: output file: build colormap = 0 repartition: enable = 0 aggregation: output filename = MPI-Viz-Output-Elasticity3D-ConvexHulls-Level%LEVELID max levels = 10 [default] rap: algorithm = galerkin [default] rap: triple product = 1 [unused] ******* WARNING ******* The following parameters were not used: rap: triple product = 1 [unused] Clearing old data (if any) Replacing coordinate map Using default factory (SmootherFactory[105]) for building 'Smoother'. Using default factory (AmalgamationFactory[107]) for building 'UnAmalgamationInfo'. Level 0 Setup Smoother (MueLu::Ifpack2Smoother{type = RELAXATION}) "Ifpack2::Relaxation": {Initialized: true, Computed: true, Type: Symmetric Gauss-Seidel, sweeps: 1, damping factor: 1, Global matrix dimensions: [3000, 3000], Global nnz: 197568} Using default factory (SmootherFactory[118]) for building 'Smoother'. Using default factory (AmalgamationFactory[120]) for building 'UnAmalgamationInfo'. Level 1 Build (MueLu::TentativePFactory) Build (MueLu::UncoupledAggregationFactory) Build (MueLu::CoalesceDropFactory) Build (MueLu::AmalgamationFactory) AmalagamationFactory::Build(): found fullblocksize=3 and stridedblocksize=3 from strided maps. offset=0 lightweight wrap = 1 algorithm = "classical" classical algorithm = "default": threshold = 0, blocksize = 3 Level::Set: Not storing "Filtering" generated by factory CoalesceDropFactory[18] on level 0, as it has not been requested and no keep flags were set for it Detected 0 agglomerated Dirichlet nodes Number of dropped entries in amalgamated matrix graph: 0/21952 (0%) Algo "Phase - (Dirichlet)" BuildAggregatesNonKokkos (Phase - (Dirichlet)) aggregated : 0 (phase), 0/1000 [0.00%] (total) remaining : 1000 aggregates : 0 (phase), 0 (total) Algo "Phase 1 (main)" BuildAggregatesNonKokkos (Phase 1 (main)) aggregated : 1000 (phase), 1000/1000 [100.00%] (total) remaining : 0 aggregates : 64 (phase), 64 (total) Algo "Phase 2a (secondary)" BuildAggregatesNonKokkos (Phase 2a (secondary)) aggregated : 0 (phase), 1000/1000 [100.00%] (total) remaining : 0 aggregates : 0 (phase), 64 (total) Algo "Phase 2b (expansion)" BuildAggregatesNonKokkos (Phase 2b (expansion)) aggregated : 0 (phase), 1000/1000 [100.00%] (total) remaining : 0 aggregates : 0 (phase), 64 (total) Algo "Phase 3 (cleanup)" BuildAggregatesNonKokkos (Phase 3 (cleanup)) aggregated : 0 (phase), 1000/1000 [100.00%] (total) remaining : 0 aggregates : 0 (phase), 64 (total) Build (MueLu::CoarseMapFactory) Column map is consistent with the row map, good. TentativePFactory : aggregates do not cross process boundaries Level::Set: Not storing "Coordinates" generated by factory TentativePFactory[21] on level 1, as it has not been requested and no keep flags were set for it Transpose P (MueLu::TransPFactory) Computing Ac (MueLu::RAPFactory) ******* WARNING ******* Switching from triple product to R x (A x P) since triple product has not been implemented for Cuda MxM: A x P MxM: R x (AP) (explicit) Projections RAPFactory: call transfer factory: MueLu::AggregationExportFactory AggregationExportFactory (MueLu::AggregationExportFactory) AggregationExportFactory: DofsPerNode: 3 AggregationExportFactory: outputfile "MPI-Viz-Output-Elasticity3D-ConvexHulls-Level0.vtu" RAPFactory: call transfer factory: MueLu::CoordinatesTransferFactory Build (MueLu::CoordinatesTransferFactory) Transferring coordinates MapFactory: coarseCoordMap p=0: *** Caught standard std::exception of type 'std::runtime_error' : Tpetra::Details::WrappedDualView (name = MV::DualView; host use_count = 3; device use_count = 2): Cannot access data on device while a host view is alive -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpiexec detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[51115,1],0] Exit code: 1 -------------------------------------------------------------------------- ```
maxfirmbach commented 2 weeks ago

Still WIP.

maxfirmbach commented 2 weeks ago

@jhux2 Tested things with a CUDA build, should work now, thus ready for testing :+1:.

trilinos-autotester commented 2 weeks ago

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester commented 2 weeks ago

Status Flag 'Pre-Test Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED by label AT: PRE-TEST INSPECTED! Autotester is Removing Label; this inspection will remain valid until a new commit to source branch is performed.

trilinos-autotester commented 2 weeks ago

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Build Information

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TRILINOS_SOURCE_SHA 1a698f50e160822e4072d94caaedbb397fd3bd04
TRILINOS_SRN_CONFIG true
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TRILINOS_TARGET_SHA d7d7ee234aaecf6fbed4bf3360d34770adc5d0d1

Using Repos:

Repo: TRILINOS (maxfirmbach/Trilinos)
  • Branch: Set-factory-more-specifically-for-aggregate-export
  • SHA: 1a698f50e160822e4072d94caaedbb397fd3bd04
  • Mode: TEST_REPO
Pull Request Author: maxfirmbach
trilinos-autotester commented 2 weeks ago

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

  • Build Num: 717
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
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TRILINOS_TARGET_SHA d7d7ee234aaecf6fbed4bf3360d34770adc5d0d1

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TRILINOS_TARGET_SHA d7d7ee234aaecf6fbed4bf3360d34770adc5d0d1

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TRILINOS_TARGET_SHA d7d7ee234aaecf6fbed4bf3360d34770adc5d0d1

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TRILINOS_TARGET_SHA d7d7ee234aaecf6fbed4bf3360d34770adc5d0d1


CDash Test Results for PR# 13577.

trilinos-autotester commented 2 weeks ago

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging WARNING: NO REVIEWERS HAVE BEEN REQUESTED FOR THIS PULL REQUEST!

trilinos-autotester commented 2 weeks ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester commented 2 weeks ago

Status Flag 'Pre-Test Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging NO INSPECTION HAS BEEN PERFORMED ON THIS PULL REQUEST! - This PR must be inspected by setting label 'AT: PRE-TEST INSPECTED'.

maxfirmbach commented 2 weeks ago

@jhux2 @cgcgcg This is ready for retesting ... I forgot to sign the commit and had to fix the formatting.

trilinos-autotester commented 2 weeks ago

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester commented 2 weeks ago

Status Flag 'Pre-Test Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED by label AT: PRE-TEST INSPECTED! Autotester is Removing Label; this inspection will remain valid until a new commit to source branch is performed.

trilinos-autotester commented 2 weeks ago

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

  • Build Num: 726
  • Status: STARTED

Jenkins Parameters

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TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c

Using Repos:

Repo: TRILINOS (maxfirmbach/Trilinos)
  • Branch: Set-factory-more-specifically-for-aggregate-export
  • SHA: a319a1950895d3d08b3eca71e5720dba1ee12623
  • Mode: TEST_REPO
Pull Request Author: maxfirmbach
trilinos-autotester commented 2 weeks ago

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

  • Build Num: 726
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-openmpi-4.1.6-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: MueLu;AT: RETEST
PULLREQUESTNUM 13577
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c

Build Information

Test Name: PR_gcc

  • Build Num: 776
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: MueLu;AT: RETEST
PULLREQUESTNUM 13577
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c

Build Information

Test Name: PR_gcc-openmpi_debug

  • Build Num: 777
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-openmpi-4.1.6-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: MueLu;AT: RETEST
PULLREQUESTNUM 13577
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c

Build Information

Test Name: PR_clang

  • Build Num: 775
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-clang-11.0.1-openmpi-4.0.5-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: MueLu;AT: RETEST
PULLREQUESTNUM 13577
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c

Build Information

Test Name: Trilinos_PR_python3

  • Build Num: 4734
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
BLOCKING_BUILD false
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_aue-gnu-12.1.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework
PR_LABELS pkg: MueLu;AT: RETEST
PULLREQUESTNUM 13577
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c

Build Information

Test Name: PR_cuda

  • Build Num: 774
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: MueLu;AT: RETEST
PULLREQUESTNUM 13577
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8-gpu
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c

Build Information

Test Name: PR_intel

  • Build Num: 695
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-intel-2021.3-sems-openmpi-4.1.6_release-debug_shared_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: MueLu;AT: RETEST
PULLREQUESTNUM 13577
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c

Build Information

Test Name: PR_cuda-uvm

  • Build Num: 774
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
PR_LABELS pkg: MueLu;AT: RETEST
PULLREQUESTNUM 13577
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/maxfirmbach/Trilinos
TRILINOS_SOURCE_SHA a319a1950895d3d08b3eca71e5720dba1ee12623
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4e6e2ca89df63eb0050d822a60b575e2c0ddcd9c


CDash Test Results for PR# 13577.

trilinos-autotester commented 2 weeks ago

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging WARNING: NO REVIEWERS HAVE BEEN REQUESTED FOR THIS PULL REQUEST!

trilinos-autotester commented 2 weeks ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester commented 1 week ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester commented 1 week ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester commented 1 week ago

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester commented 1 week ago

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ jhux2 ]!

trilinos-autotester commented 1 week ago

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...