mhoemmen
commented
7 years ago Did running CMake actually succeed? Don't send the log; send the actual output of CMake. CMake configuration may attempt to build temporary source code files, as a way to figure out whether the compiler or link implements certain features. This may cause "build errors" to show up in the log. Those are not necessarily actual errors in Trilinos. They are just tests for Trilinos to figure out what the compiler can and cannot do.
milyas7
On febora 25 virtual machine I am trying to build trilinios 12.10.1 with following script:
module load mpi/mpich-x86_64
make clean
rm -rf CMake*
cmake \ -D CMAKE_INSTALL_PREFIX:PATH=/home/peri/packages/trilinos-12.10.1-Source \ -D CMAKE_CXX_FLAGS:STRING="-O2 -ansi -pedantic -ftrapv -Wall -Wno-long-long" \ -D CMAKE_BUILD_TYPE:STRING=RELEASE \ -DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON -D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \ -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \ -D Trilinos_ENABLE_Teuchos:BOOL=ON \ -D Trilinos_ENABLE_Shards:BOOL=ON \ -D Trilinos_ENABLE_Sacado:BOOL=ON \ -D Trilinos_ENABLE_Epetra:BOOL=ON \ -D Trilinos_ENABLE_EpetraExt:BOOL=ON \ -D Trilinos_ENABLE_Ifpack:BOOL=ON \ -D Trilinos_ENABLE_AztecOO:BOOL=ON \ -D Trilinos_ENABLE_Amesos:BOOL=ON \ -D Trilinos_ENABLE_Anasazi:BOOL=ON \ -D Trilinos_ENABLE_Belos:BOOL=ON \ -D Trilinos_ENABLE_ML:BOOL=ON \ -D Trilinos_ENABLE_Phalanx:BOOL=ON \ -D Trilinos_ENABLE_Intrepid:BOOL=ON \ -D Trilinos_ENABLE_NOX:BOOL=ON \ -D Trilinos_ENABLE_Stratimikos:BOOL=ON \ -D Trilinos_ENABLE_Thyra:BOOL=ON \ -D Trilinos_ENABLE_Rythmos:BOOL=ON \ -D Trilinos_ENABLE_MOOCHO:BOOL=ON \ -D Trilinos_ENABLE_TriKota:BOOL=OFF \ -D Trilinos_ENABLE_Stokhos:BOOL=ON \ -D Trilinos_ENABLE_Zoltan:BOOL=ON \ -D Trilinos_ENABLE_Piro:BOOL=ON \ -D Trilinos_ENABLE_Teko:BOOL=ON \ -D Trilinos_ENABLE_SEACASIoss:BOOL=ON \ -D Trilinos_ENABLE_SEACAS:BOOL=ON \ -D Trilinos_ENABLE_SEACASBlot:BOOL=ON \ -D Trilinos_ENABLE_Pamgen:BOOL=ON \ -D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \ -D Trilinos_ENABLE_TESTS:BOOL=ON \ -D TPL_ENABLE_HDF5:BOOL=ON \ -D HDF5_INCLUDE_DIRS:PATH=/usr/include/mpich-x86_64/ \ -D HDF5_LIBRARY_DIRS:PATH=/usr/lib64/mpich/lib/ \ -D TPL_ENABLE_Netcdf:BOOL=ON \ -D Netcdf_INCLUDE_DIRS:PATH=/usr/include/mpich-x86_64/ \ -D Netcdf_LIBRARY_DIRS:PATH=/usr/lib64/mpich/lib/ \ -D TPL_ENABLE_Matio=OFF \ -D TPL_ENABLE_MPI:BOOL=ON \ -D MPI_BASE_DIR:PATH="/usr/lib64/mpich/" \ -D MPI_CXX_COMPILER:STRING=mpicxx \ -D MPI_C_COMPILER:STRING=mpicc \ -D MPI_Fortran_COMPILER:STRING=mpif90 \ -D TPL_ENABLE_BLAS:BOOL=ON \ -D TPL_ENABLE_LAPACK:BOOL=ON \ -D TPL_ENABLE_Boost:BOOL=ON \ -D Boost_INCLUDE_DIRS:PATH=/usr/include/boost/ \ -D Boost_LIBRARY_DIRS:PATH=/usr/lib64/mpich/lib/ \ -D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF \ -D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF \ -D BUILD_SHARED_LIBS=ON \ ..
CMakeError.log contains following:
Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISNAN failed with the following output: Change Dir: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_f4671/fast" /usr/bin/gmake -f CMakeFiles/cmTC_f4671.dir/build.make CMakeFiles/cmTC_f4671.dir/build gmake[1]: Entering directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_f4671.dir/src.cxx.o /usr/lib64/mpich/bin/mpicxx -O2 -ansi -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISNAN -o CMakeFiles/cmTC_f4671.dir/src.cxx.o -c /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:6:10: error: ‘isnan’ was not declared in this scope isnan(x); ^ /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:6:10: note: suggested alternative: In file included from /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:2:0: /usr/include/c++/6.3.1/cmath:662:5: note: ‘std::isnan’ isnan(_Tp __x) ^~~~~ CMakeFiles/cmTC_f4671.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_f4671.dir/src.cxx.o' failed gmake[1]: [CMakeFiles/cmTC_f4671.dir/src.cxx.o] Error 1 gmake[1]: Leaving directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Makefile:126: recipe for target 'cmTC_f4671/fast' failed gmake: [cmTC_f4671/fast] Error 2
Source file was:
include
int main() { double x = 1.0; isnan(x); return 0; }
Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISINF failed with the following output: Change Dir: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_fcabc/fast" /usr/bin/gmake -f CMakeFiles/cmTC_fcabc.dir/build.make CMakeFiles/cmTC_fcabc.dir/build gmake[1]: Entering directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_fcabc.dir/src.cxx.o /usr/lib64/mpich/bin/mpicxx -O2 -ansi -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISINF -o CMakeFiles/cmTC_fcabc.dir/src.cxx.o -c /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:6:10: error: ‘isinf’ was not declared in this scope isinf(x); ^ /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:6:10: note: suggested alternative: In file included from /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:2:0: /usr/include/c++/6.3.1/cmath:635:5: note: ‘std::isinf’ isinf(_Tp __x) ^~~~~ CMakeFiles/cmTC_fcabc.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_fcabc.dir/src.cxx.o' failed gmake[1]: [CMakeFiles/cmTC_fcabc.dir/src.cxx.o] Error 1 gmake[1]: Leaving directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Makefile:126: recipe for target 'cmTC_fcabc/fast' failed gmake: [cmTC_fcabc/fast] Error 2
Source file was:
include
int main() { double x = 1.0; isinf(x); return 0; }
Determining if the pthread_create exist failed with the following output: Change Dir: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_c7aa1/fast" /usr/bin/gmake -f CMakeFiles/cmTC_c7aa1.dir/build.make CMakeFiles/cmTC_c7aa1.dir/build gmake[1]: Entering directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_c7aa1.dir/CheckSymbolExists.c.o /usr/lib64/mpich/bin/mpicc -o CMakeFiles/cmTC_c7aa1.dir/CheckSymbolExists.c.o -c /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c Linking C executable cmTC_c7aa1 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_c7aa1.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicc -rdynamic CMakeFiles/cmTC_c7aa1.dir/CheckSymbolExists.c.o -o cmTC_c7aa1 /usr/bin/ld: CMakeFiles/cmTC_c7aa1.dir/CheckSymbolExists.c.o: undefined reference to symbol 'pthread_create@@GLIBC_2.2.5' /usr/lib64/libpthread.so.0: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status CMakeFiles/cmTC_c7aa1.dir/build.make:97: recipe for target 'cmTC_c7aa1' failed gmake[1]: [cmTC_c7aa1] Error 1 gmake[1]: Leaving directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Makefile:126: recipe for target 'cmTC_c7aa1/fast' failed gmake: [cmTC_c7aa1/fast] Error 2
File /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: / /
include
int main(int argc, char** argv) { (void)argv;
ifndef pthread_create
return ((int*)(&pthread_create))[argc];
else
(void)argc; return 0;
endif
}
Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_059e0/fast" /usr/bin/gmake -f CMakeFiles/cmTC_059e0.dir/build.make CMakeFiles/cmTC_059e0.dir/build gmake[1]: Entering directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_059e0.dir/CheckFunctionExists.c.o /usr/lib64/mpich/bin/mpicc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/cmTC_059e0.dir/CheckFunctionExists.c.o -c /usr/share/cmake/Modules/CheckFunctionExists.c Linking C executable cmTC_059e0 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_059e0.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicc -DCHECK_FUNCTION_EXISTS=pthread_create -rdynamic CMakeFiles/cmTC_059e0.dir/CheckFunctionExists.c.o -o cmTC_059e0 -lpthreads /usr/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status CMakeFiles/cmTC_059e0.dir/build.make:97: recipe for target 'cmTC_059e0' failed gmake[1]: [cmTC_059e0] Error 1 gmake[1]: Leaving directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Makefile:126: recipe for target 'cmTC_059e0/fast' failed gmake: [cmTC_059e0/fast] Error 2
Performing C++ SOURCE FILE Test HAVE_TEUCHOS_LAPACKLARND failed with the following output: Change Dir: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_5008b/fast" /usr/bin/gmake -f CMakeFiles/cmTC_5008b.dir/build.make CMakeFiles/cmTC_5008b.dir/build gmake[1]: Entering directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_5008b.dir/src.cxx.o /usr/lib64/mpich/bin/mpicxx -O2 -ansi -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DHAVE_TEUCHOS_LAPACKLARND -o CMakeFiles/cmTC_5008b.dir/src.cxx.o -c /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:12:38: error: narrowing conversion of ‘0.0’ from ‘double’ to ‘int’ inside { } [-Wnarrowing] int seed[4] = { 0.0, 0.0, 0.0, 1.0 }; ^ /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:12:38: error: narrowing conversion of ‘0.0’ from ‘double’ to ‘int’ inside { } [-Wnarrowing] /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:12:38: error: narrowing conversion of ‘0.0’ from ‘double’ to ‘int’ inside { } [-Wnarrowing] /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:12:38: error: narrowing conversion of ‘1.0e+0’ from ‘double’ to ‘int’ inside { } [-Wnarrowing] CMakeFiles/cmTC_5008b.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_5008b.dir/src.cxx.o' failed gmake[1]: [CMakeFiles/cmTC_5008b.dir/src.cxx.o] Error 1 gmake[1]: Leaving directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Makefile:126: recipe for target 'cmTC_5008b/fast' failed gmake: [cmTC_5008b/fast] Error 2
Return value: 1 Source file was:
define F77_BLASMANGLE(name,NAME) name ##
define DLARND_F77 F77_BLAS_MANGLE(dlarnd,DLARND)
extern "C" { double DLARND_F77(const int idist, int seed); }
int main() {
const int idist = 1; int seed[4] = { 0.0, 0.0, 0.0, 1.0 };
double val = DLARND_F77(&idist, seed);
return (val < 0.0 ? 1 : 0);
}
Performing C++ SOURCE FILE Test HAVE_CXX_PRAGMA_WEAK failed with the following output: Change Dir: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_79626/fast" /usr/bin/gmake -f CMakeFiles/cmTC_79626.dir/build.make CMakeFiles/cmTC_79626.dir/build gmake[1]: Entering directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_79626.dir/src.cxx.o /usr/lib64/mpich/bin/mpicxx -O2 -ansi -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DHAVE_CXX_PRAGMA_WEAK -o CMakeFiles/cmTC_79626.dir/src.cxx.o -c /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’: /home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:14:22: warning: the address of ‘void A::theFunction()’ will never be NULL [-Waddress] if (A::theFunction != NULL) { ^ Linking CXX executable cmTC_79626 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_79626.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -ansi -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DHAVE_CXX_PRAGMA_WEAK -rdynamic CMakeFiles/cmTC_79626.dir/src.cxx.o -o cmTC_79626 CMakeFiles/cmTC_79626.dir/src.cxx.o: In function
main': src.cxx:(.text.startup+0x25): undefined reference toA::theFunction()' collect2: error: ld returned 1 exit status CMakeFiles/cmTC_79626.dir/build.make:97: recipe for target 'cmTC_79626' failed gmake[1]: [cmTC_79626] Error 1 gmake[1]: Leaving directory '/home/peri/packages/trilinos-12.10.1-Source/build/CMakeFiles/CMakeTmp' Makefile:126: recipe for target 'cmTC_79626/fast' failed gmake: [cmTC_79626/fast] Error 2Source file was:
include
namespace A { // theFunction never gets defined, because we // don't link with a library that defines it. // That's OK, because it's weak linkage.
pragma weak theFunction
extern void theFunction (); }
int main() { std::cout << "Hi! I am main." << std::endl; if (A::theFunction != NULL) { // Should never be called, since we don't link // with a library that defines A::theFunction. A::theFunction (); } return 0; }
how can these errors be avoided?