Closed atzberg closed 5 years ago
@atzberg I think I know the problem. I typically test PyTrilinos on MacOS X, and its file system is case-insensitive. Thus on my platform, my build system finds IFPACK_ConfigDefs.h
even though it is really Ifpack_ConfigDefs.h
I assume you are not on MacOS X?
@wfspotz Correct, he is not using an Apple:
Linux asus-workstation 4.4.0-134-generic #160-Ubuntu SMP Wed Aug 15 14:58:00 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
This is similar/duplicate to issue #3245 (and you'll probably run into #3215 as well) -- you should be able to follow the same fix. It worked for my: Linux [redacted].ices.utexas.edu 3.10.0-862.11.6.el7.x86_64 #1 SMP Tue Aug 14 21:49:04 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
[charles@carbon Trilinos (3215-3245-pytrilinos-headers)]$ git diff 3bc4815edcf66bad28db26336cefd2d56056250
diff --git a/packages/PyTrilinos/src/PyTrilinos_IFPACK_Headers.hpp b/packages/PyTrilinos/src/PyTrilinos_IFPACK_Headers.hpp
index 4918666..42fff9f 100644
--- a/packages/PyTrilinos/src/PyTrilinos_IFPACK_Headers.hpp
+++ b/packages/PyTrilinos/src/PyTrilinos_IFPACK_Headers.hpp
@@ -45,7 +45,7 @@
// Configuration
#include "PyTrilinos_config.h"
-#include "IFPACK_ConfigDefs.h"
+#include "Ifpack_ConfigDefs.h"
// IFPACK include files
#include "Ifpack.h"
diff --git a/packages/PyTrilinos/src/gen_teuchos_rcp.py.in b/packages/PyTrilinos/src/gen_teuchos_rcp.py.in
index 9775c43..89c20c9 100755
--- a/packages/PyTrilinos/src/gen_teuchos_rcp.py.in
+++ b/packages/PyTrilinos/src/gen_teuchos_rcp.py.in
@@ -46,7 +46,7 @@ def get_mpi_version():
version = ""
for line in open(header, 'r').readlines():
if "MPI_VERSION" in line:
- version = line.split(" ")[2]
+ version = line.split()[2]
break
return version
I've been meaning to post my fixes for a similar configuration, but I'm still learning how to submit fixes to this project.
@noisycat Could you please use triple backquotes to protect your monospace example? It's getting a bit distorted due to automatic formatting. For example:
here_is_some_cplusplus_code<typename Foo::bar_type> ();
Thanks everyone! I manually fixed the case on the file IFPACK_XXX.h to Ifpack_XXX.h which resolved this particular issue. Still not able to fully compile PyTrilinos, but this is definitely forward progress and the help much appreciated.
I now get a new issue which I will try to track down on the forums to ""No default Tpetra Node type specified. Please set the CMake option Tpetra_DefaultNode to a valid Node type."". I suspect this has something to do with new Kokkos and my configuration setup. I'll look at GitHub forums to try to track this one down. Of course any pointers always appreciated.
Thanks to all!
@atzberg wrote:
No default Tpetra Node type specified. Please set the CMake option
Tpetra_DefaultNode
to a valid Node type.
It's pretty hard to get that message unless you are setting a lot of Tpetra_
and/or Kokkos_
configure-time flags in nondefault ways. Would you mind posting the CMake options you are setting, at least those relating to Kokkos and Tpetra?
Thanks for the inquiry. Yes, still working to get PyTrilinos to compile. Here is what I used for the error involving the Tpetra_DefaultNode issue.
For the configuration I do:
cmake \ -D CMAKE_INSTALL_PREFIX:PATH=$INSTALL_DIR \ -D CMAKE_BUILD_TYPE:STRING=RELEASE \ -D MPI_BASE_DIR:FILEPATH=/usr/lib/openmpi \ -D CMAKE_C_COMPILER:FILEPATH=/usr/bin/mpicc \ -D CMAKE_CXX_COMPILER:FILEPATH=/usr/bin/mpicxx \ -D CMAKE_Fortran_COMPILER:FILEPATH=/usr/bin/mpifort \ \ -D TPL_ENABLE_MPI:BOOL=ON \ -D Trilinos_ENABLE_OpenMP:BOOL=ON \ -D TPL_ENABLE_Pthread:BOOL=OFF \ \ -D BLAS_LIBRARY_NAMES:STRING="blas;gfortran" \ -D BLAS_LIBRARY_DIRS:PATH=/usr/lib \ -D LAPACK_LIBRARY_NAMES:STRING="lapack;lapacke;gfortran" \ -D LAPACK_LIBRARY_DIRS:PATH=/usr/lib \ \ -D Trilinos_ENABLE_PyTrilinos:BOOL=ON \ -D BUILD_SHARED_LIBS:BOOL=ON \ -D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON \ -D PYTHON_EXECUTABLE:FILEPATH=/home/userName/anaconda3/envs/py27-pyTrilinos/bin/python \ $SRC_DIR
However, now that I did a recent git pull and merge of latest Trilinos today, I now get new error at 97% below
...
Scanning dependencies of target PyTrilinos_LOCA_Extended
[ 97%] Building CXX object packages/PyTrilinos/src/CMakeFiles/PyTrilinos_LOCA_Extended.dir/LOCA.ExtendedPYTHON_wrap.cpp.o
[ 97%] Linking CXX shared module PyTrilinos/LOCA/_Extended.so
Byte compiling LOCA/Extended.py
[ 97%] Built target PyTrilinos_LOCA_Extended
Scanning dependencies of target PyTrilinos_Teuchos_RCP
[ 97%] Building CXX object packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Teuchos_RCP.dir/Teuchos.RCPPYTHON_wrap.cpp.o
In file included from /home/userName/Sandia_Trilinos/packages/ml/src/MLAPI/MLAPI_MultiVector.h:26:0,
from /home/userName/Sandia_Trilinos/packages/ml/src/MLAPI/MLAPI_Operator.h:25,
from /home/userName/Sandia_Trilinos/packages/PyTrilinos/src/PyTrilinos_ML_Util.hpp:48,
from /home/userName/Sandia_Trilinos/packages/PyTrilinos/src/PyTrilinos_ML_Headers.hpp:57,
from /home/userName/Sandia_Trilinos/build/packages/PyTrilinos/src/Teuchos.RCPPYTHON_wrap.cpp:3419:
/home/userName/Sandia_Trilinos/packages/teuchos/numerics/src/Teuchos_BLAS_wrappers.hpp:173:120: error: conflicting declaration of C function ‘void daxpy_(const int*, const double*, const double*, const int*, double*, const int*)’
void PREFIX DAXPY_F77(const int* n, const double* alpha, const double x[], const int* incx, double y[], const int* incy);
^
In file included from /home/userName/Sandia_Trilinos/packages/kokkos-kernels/src/blas/impl/KokkosBlas1_axpby_spec.hpp:475:0,
from /home/userName/Sandia_Trilinos/packages/kokkos-kernels/src/blas/KokkosBlas1_axpby.hpp:47,
from /home/userName/Sandia_Trilinos/packages/kokkos-kernels/src/blas/KokkosBlas.hpp:48,
from /home/userName/Sandia_Trilinos/packages/tpetra/core/src/Tpetra_MultiVector_def.hpp:69,
from /home/userName/Sandia_Trilinos/build/packages/tpetra/core/src/Tpetra_MultiVector.hpp:2,
from /home/userName/Sandia_Trilinos/packages/tpetra/core/src/Tpetra_Vector_def.hpp:53,
from /home/userName/Sandia_Trilinos/build/packages/tpetra/core/src/Tpetra_Vector.hpp:2,
from /home/userName/Sandia_Trilinos/packages/domi/src/Domi_MDVector.hpp:70,
from /home/userName/Sandia_Trilinos/packages/PyTrilinos/src/PyTrilinos_Domi_Util.hpp:53,
from /home/userName/Sandia_Trilinos/packages/PyTrilinos/src/PyTrilinos_Domi_Headers.hpp:51,
from /home/userName/Sandia_Trilinos/build/packages/PyTrilinos/src/Teuchos.RCPPYTHON_wrap.cpp:3410:
/home/userName/Sandia_Trilinos/packages/kokkos-kernels/src/impl/tpls/KokkosBlas1_axpby_tpl_spec_decl.hpp:49:17: note: previous declaration ‘void daxpy_(const int*, const double*, const double*, const int*, const double*, const int*)’
extern "C" void daxpy_( const int* N, const double* alpha,
^
In file included from /home/userName/Sandia_Trilinos/packages/ml/src/MLAPI/MLAPI_MultiVector.h:26:0,
from /home/userName/Sandia_Trilinos/packages/ml/src/MLAPI/MLAPI_Operator.h:25,
from /home/userName/Sandia_Trilinos/packages/PyTrilinos/src/PyTrilinos_ML_Util.hpp:48,
from /home/userName/Sandia_Trilinos/packages/PyTrilinos/src/PyTrilinos_ML_Headers.hpp:57,
from /home/userName/Sandia_Trilinos/build/packages/PyTrilinos/src/Teuchos.RCPPYTHON_wrap.cpp:3419:
/home/userName/Sandia_Trilinos/packages/teuchos/numerics/src/Teuchos_BLAS_wrappers.hpp:230:117: error: conflicting declaration of C function ‘void saxpy_(const int*, const float*, const float*, const int*, float*, const int*)’
void PREFIX SAXPY_F77(const int* n, const float* alpha, const float x[], const int* incx, float y[], const int* incy);
^
In file included from /home/userName/Sandia_Trilinos/packages/kokkos-kernels/src/blas/impl/KokkosBlas1_axpby_spec.hpp:475:0,
from /home/userName/Sandia_Trilinos/packages/kokkos-kernels/src/blas/KokkosBlas1_axpby.hpp:47,
from /home/userName/Sandia_Trilinos/packages/kokkos-kernels/src/blas/KokkosBlas.hpp:48,
from /home/userName/Sandia_Trilinos/packages/tpetra/core/src/Tpetra_MultiVector_def.hpp:69,
from /home/userName/Sandia_Trilinos/build/packages/tpetra/core/src/Tpetra_MultiVector.hpp:2,
from /home/userName/Sandia_Trilinos/packages/tpetra/core/src/Tpetra_Vector_def.hpp:53,
from /home/userName/Sandia_Trilinos/build/packages/tpetra/core/src/Tpetra_Vector.hpp:2,
from /home/userName/Sandia_Trilinos/packages/domi/src/Domi_MDVector.hpp:70,
from /home/userName/Sandia_Trilinos/packages/PyTrilinos/src/PyTrilinos_Domi_Util.hpp:53,
from /home/userName/Sandia_Trilinos/packages/PyTrilinos/src/PyTrilinos_Domi_Headers.hpp:51,
from /home/userName/Sandia_Trilinos/build/packages/PyTrilinos/src/Teuchos.RCPPYTHON_wrap.cpp:3410:
/home/userName/Sandia_Trilinos/packages/kokkos-kernels/src/impl/tpls/KokkosBlas1_axpby_tpl_spec_decl.hpp:52:17: note: previous declaration ‘void saxpy_(const int*, const float*, const float*, const int*, const float*, const int*)’
extern "C" void saxpy_( const int* N, const float* alpha,
^
packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Teuchos_RCP.dir/build.make:73: recipe for target 'packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Teuchos_RCP.dir/Teuchos.RCPPYTHON_wrap.cpp.o' failed
make[2]: *** [packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Teuchos_RCP.dir/Teuchos.RCPPYTHON_wrap.cpp.o] Error 1
CMakeFiles/Makefile2:17690: recipe for target 'packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Teuchos_RCP.dir/all' failed
make[1]: *** [packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Teuchos_RCP.dir/all] Error 2
Makefile:160: recipe for target 'all' failed
make: *** [all] Error 2
I suspect this is related to some of the linked posts / errors noted above and plan to look through those to try to resolve. If not something seen already, any tips are always appreciated.
I have gotten Trilinos itself to compile recently without issue. The PyTrilinos has posed some challenges. Thanks again for your helpful comments.
This looks like the following outstanding kokkos-kernels issue: https://github.com/kokkos/kokkos-kernels/issues/282
I've now fixed manually for the header prototype definitions to match up with the requested types. This allowed forward progress on compilation.
Now I get the error:
[ 98%] Linking CXX shared module PyTrilinos/LOCA/_SaveEigenData.so
Byte compiling LOCA/SaveEigenData.py
[ 98%] Built target PyTrilinos_LOCA_SaveEigenData
[ 98%] Swig source /userName/Sandia_Trilinos/packages/PyTrilinos/src/Domi.i
/userName/Sandia_Trilinos/packages/kokkos/core/src/Kokkos_Macros.hpp:213: Warning 305: Bad constant value (ignored).
/userName/Sandia_Trilinos/packages/PyTrilinos/src/Tpetra.i:808: Error: Template 'Map' undefined.
/userName/Sandia_Trilinos/packages/PyTrilinos/src/Tpetra.i:874: Error: Template 'Export' undefined.
/userName/Sandia_Trilinos/packages/PyTrilinos/src/Tpetra.i:889: Error: Template 'Import' undefined.
packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Domi.dir/build.make:61: recipe for target 'packages/PyTrilinos/src/DomiPYTHON_wrap.cpp' failed
make[2]: *** [packages/PyTrilinos/src/DomiPYTHON_wrap.cpp] Error 3
make[2]: *** Deleting file 'packages/PyTrilinos/src/DomiPYTHON_wrap.cpp'
CMakeFiles/Makefile2:18711: recipe for target 'packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Domi.dir/all' failed
make[1]: *** [packages/PyTrilinos/src/CMakeFiles/PyTrilinos_Domi.dir/all] Error 2
Makefile:160: recipe for target 'all' failed
make: *** [all] Error 2
Thanks everyone for all the tips. I think I am getting close to this all compiling. Looking forward to resolving for use of PyTrilinos. Thanks again!
@atzberg See PR #3475. I'll merge it.
Thanks for help! That allowed forward progress to build to 100%.
The error I now get is during the "make install" phase.
-- Installing: /home/atzberg/research/collaboration_Sandia_Trilinos_atz/install/install_PyTrilinos/include/PyTrilinos_ML_Util.hpp
-- Installing: /home/atzberg/research/collaboration_Sandia_Trilinos_atz/install/install_PyTrilinos/include/swigpyrun.h
-- Installing: /home/atzberg/research/collaboration_Sandia_Trilinos_atz/install/install_PyTrilinos/lib/python2.7/site-packages/PyTrilinos/Teuchos/__init__.py
-- Installing: /home/atzberg/research/collaboration_Sandia_Trilinos_atz/install/install_PyTrilinos/lib/python2.7/site-packages/PyTrilinos/Teuchos/__init__.pyc
CMake Error at /home/atzberg/research/collaboration_Sandia_Trilinos_atz/build/packages/PyTrilinos/src/cmake_install.cmake:122 (file):
file INSTALL cannot find
"/home/atzberg/research/collaboration_Sandia_Trilinos_atz/build/packages/PyTrilinos/src/PyTrilinos/Teuchos/___init__.so".
Call Stack (most recent call first):
/home/atzberg/research/collaboration_Sandia_Trilinos_atz/build/packages/PyTrilinos/cmake_install.cmake:66 (include)
cmake_install.cmake:107 (include)
Makefile:72: recipe for target 'install' failed
make: *** [install] Error 1
Perhaps this one is easier to resolve or I missed something simple? Or perhaps something indeed did not build as intended? Thanks everyone for all of your help on things.
P.S. I attached the full output when calling again "make install" if that is helpful.
@wfspotz may be able to help you here. I think he is working on issues that look like this.
This and several other PyTrilinos fixes have been pushed to the develop
branch.
Thank you again everyone for all of your help with these issues. I greatly appreciate it!
There is still one funny issue with the "make install" I suspect something minor. I tried building on multiple platforms and settings and still could not resolve. When I do "make install" I see the following each time: " ... [ 98%] Linking CXX shared module PyTrilinos/Teuchos/_init.so Moving and byte compiling Teuchos/init.py .... "
Now when doing "make install" there is the error that _init.so is missing for Teuchos, (and indeed no file is in the directory mentioned above). It is funny how the cmake shows it builds it, but somehow it does not get built or disappears? I've done fresh config + make sessions and same error occurs. I'm using Anaconda python 2.7 (same config as above). I even tried turning on explicitly Teuchos package... all result in below. Would be great to get the PyTrilinos installed. Thanks!
-- Up-to-date: /userName/Sandia_Trilinos/install/install_PyTrilinos/lib/python2.7/site-packages/PyTrilinos/Teuchos/__init__.py
-- Installing: /userName/Sandia_Trilinos/install/install_PyTrilinos/lib/python2.7/site-packages/PyTrilinos/Teuchos/__init__.pyc
CMake Error at packages/PyTrilinos/src/cmake_install.cmake:122 (file):
file INSTALL cannot find
"/userName/Sandia_Trilinos/build_PyTrilinos/packages/PyTrilinos/src/PyTrilinos/Teuchos/___init__.so".
Call Stack (most recent call first):
packages/PyTrilinos/cmake_install.cmake:66 (include)
cmake_install.cmake:106 (include)
When I do "ls I get
ls /userName/Sandia_Trilinos/build_PyTrilinos/packages/PyTrilinos/src/PyTrilinos/Teuchos/
CMakeFiles cmake_install.cmake CTestTestfile.cmake __init__.py __init__.pyc Makefile RCP.py _RCP.so _Teuchos.so
@wfspotz
This certainly looks weird to an "outsider" but I see what it is. I changed the Teuchos wrappers from a module to a package to accommodate a new Teuchos.RCP
submodule that allows users to inquire about the number of references a PyTrilinos object has. This means that
Teuchos.py
became
Teuchos/__init__.py
RCP.py
Unfortunately, SWIG misinterprets some class names under this change. For example, SWIG thinks
Teuchos.Describable
is (erroneously)
Teuchos.__init__.Describable
Long story short, I had to play some games and-post process the python package and modules names to get the behavior that users would expect. These modifications didn't propagate to the make install
directive, which I now have to fix.
@atzberg It appears the Ifpack
fix worked. If this is the case, I will keep this issue closed and open a new one for the package/module/install problem.
@atzberg see #3545
Thanks Bill for help. The new git pull did not fix the issue. We should probably open new issue tag to try to resolve. The issue is still with no copy of the .so file missing. Here is the full output of config script and the make install, if helpful. Thanks, -- Paul
On Tue, Oct 2, 2018 at 10:51 AM Bill Spotz notifications@github.com wrote:
@atzberg https://github.com/atzberg see #3545 https://github.com/trilinos/Trilinos/issues/3545
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/trilinos/Trilinos/issues/3441#issuecomment-426368918, or mute the thread https://github.com/notifications/unsubscribe-auth/AIJ5Zlm0uiLtOg-4AwxfLLLuFJLHDwrmks5ug6evgaJpZM4WoLvL .
[ 0%] Built target gtest [ 1%] Built target kokkoscore [ 1%] Built target kokkoscontainers [ 1%] Built target kokkosalgorithms [ 2%] Built target teuchoscore [ 2%] Built target teuchosparser [ 4%] Built target teuchosparameterlist [ 5%] Built target teuchoscomm [ 5%] Built target teuchosnumerics [ 5%] Built target teuchosremainder [ 5%] Built target teuchoskokkoscompat [ 5%] Built target teuchoskokkoscomm [ 24%] Built target kokkoskernels [ 25%] Built target rtop [ 25%] Built target sacado [ 28%] Built target epetra [ 33%] Built target zoltan [ 33%] Built target shards [ 34%] Built target triutils [ 34%] Built target tpetraclassic [ 34%] Built target tpetraclassicnodeapi [ 34%] Built target tpetraclassiclinalg [ 34%] Built target kokkostsqr [ 36%] Built target tpetra [ 36%] Built target tpetrainout [ 37%] Built target tpetraext [ 39%] Built target trilinosss [ 41%] Built target epetraext [ 41%] Built target domi [ 44%] Built target thyracore [ 44%] Built target thyra_nonlinear_test_models [ 44%] Built target thyraepetra [ 44%] Built target thyraepetraext [ 44%] Built target thyratpetra [ 45%] Built target xpetra [ 45%] Built target xpetra-sup [ 46%] Built target isorropia [ 46%] Built target isorropia_test_utils [ 46%] Built target dpliris [ 48%] Built target aztecoo [ 48%] Built target galeri-epetra [ 48%] Built target galeri-xpetra [ 48%] Built target amesos [ 48%] Built target pamgen_extras [ 50%] Built target pamgen [ 51%] Built target zoltan2 [ 53%] Built target ifpack [ 58%] Built target ml [ 58%] Built target belos [ 58%] Built target belosepetra [ 58%] Built target belostpetra [ 58%] Built target belosxpetra [ 58%] Built target shylu_nodehts [ 58%] Built target shylu_nodetacho [ 59%] Built target amesos2 [ 68%] Built target exodus [ 72%] Built target Ioss [ 72%] Built target Ioex [ 72%] Built target Iofx [ 72%] Built target Ioexo_fac [ 72%] Built target Iopg [ 72%] Built target Iovs [ 72%] Built target Iogn [ 72%] Built target Iogs [ 72%] Built target Iohb [ 72%] Built target Iotr [ 72%] Built target Ionit [ 72%] Built target io_info_lib [ 73%] Built target cth_pressure_map [ 73%] Built target io_shell [ 73%] Built target shell_to_hex [ 73%] Built target io_info [ 73%] Built target sphgen [ 73%] Built target skinner [ 74%] Built target aprepro_lib [ 74%] Built target komplex [ 74%] Built target anasazi [ 74%] Built target anasaziepetra [ 74%] Built target ModeLaplace [ 74%] Built target anasazitpetra [ 74%] Built target ifpack2 [ 76%] Built target ifpack2-adapters [ 76%] Built target stratimikosifpack [ 77%] Built target stratimikosml [ 77%] Built target stratimikosamesos [ 77%] Built target stratimikosaztecoo [ 77%] Built target stratimikosamesos2 [ 77%] Built target stratimikosbelos [ 77%] Built target stratimikos [ 79%] Built target teko [ 79%] Built target intrepid [ 80%] Built target stk_util_util [ 81%] Built target stk_util_parallel [ 81%] Built target stk_util_env [ 82%] Built target stk_util_diag [ 82%] Built target stk_util_registry [ 82%] Built target stk_util_use_cases [ 82%] Built target stk_topology [ 84%] Built target stk_mesh_base [ 84%] Built target stk_ngp [ 84%] Built target stk_io [ 84%] Built target stk_io_util [ 84%] Built target stk_unit_main [ 84%] Built target stk_unit_test_utils [ 84%] Built target stk_math [ 84%] Built target stk_search [ 84%] Built target stk_search_util_base [ 84%] Built target stk_transfer_impl [ 85%] Built target stk_tools_lib [ 86%] Built target stk_mesh_fixtures [ 87%] Built target stk_expreval [ 89%] Built target nox [ 89%] Built target noxlapack [ 89%] Built target noxepetra [ 93%] Built target loca [ 93%] Built target localapack [ 94%] Built target locaepetra [ 94%] Built target locathyra [ 94%] Built target pytrilinos [ 94%] Built target PyTrilinos_LOCA_Epetra_Interface [ 94%] Built target PyTrilinos_LOCA_Epetra_init [ 94%] Built target PyTrilinos_LOCA_TurningPoint_MinimallyAugmented [ 94%] Built target PyTrilinos_LOCATurningPointinit [ 94%] Built target PyTrilinos_LOCA_TimeDependent [ 94%] Built target PyTrilinos_LOCA_StepSize [ 94%] Built target PyTrilinos_NOX_StatusTest [ 94%] Built target PyTrilinos_ML [ 94%] Built target PyTrilinos_NOXEpetrainit [ 94%] Built target PyTrilinosNOXinit__ [ 95%] Built target PyTrilinos_Komplex [ 95%] Built target PyTrilinos_Galeri [ 95%] Built target PyTrilinos_Isorropia_Epetra [ 96%] Built target PyTrilinos_Anasazi [ 96%] Built target PyTrilinos_Pliris [ 96%] Built target PyTrilinos_Epetra [ 96%] Built target PyTrilinos_AztecOO [ 96%] Built target PyTrilinos_LOCA_Hopf_MooreSpence [ 97%] Built target PyTrilinos_LOCA_Extended [ 98%] Built target PyTrilinos_Teuchos_RCP [ 98%] Built target PyTrilinos_Amesos [ 98%] Built target PyTrilinos_LOCA_Eigensolver [ 98%] Built target PyTrilinos_NOXSolver [ 98%] Linking CXX shared module PyTrilinos/Teuchos/init.so Moving and byte compiling Teuchos/init.py [ 98%] Built target PyTrilinos_Teuchos [ 98%] Built target PyTrilinos_LOCA_SaveEigenData [ 98%] Built target PyTrilinos_Domi [ 98%] Built target PyTrilinos_LOCA_Abstract [ 98%] Built target PyTrilinos_LOCA_MultiContinuation [ 98%] Built target PyTrilinos_NOX_Epetra_Interface [ 98%] Built target PyTrilinos_LOCA_TurningPoint_MooreSpence [ 99%] Built target PyTrilinosLOCAinit__ [ 99%] Built target PyTrilinos_LOCA_AnasaziOperator [ 99%] Built target PyTrilinos_LOCA_Bifurcation [ 99%] Built target PyTrilinos_LOCA_BorderedSolver [ 99%] Built target PyTrilinos_NOX_Abstract [ 99%] Built target PyTrilinos_LOCA_Hopf_init [ 99%] Built target PyTrilinos_EpetraExt [ 99%] Built target PyTrilinos_LOCA_BorderedSystem [ 99%] Built target PyTrilinos_TriUtils [ 99%] Built target PyTrilinos_LOCA_EigenvalueSort [ 99%] Built target PyTrilinos_LOCA_Homotopy [ 99%] Built target PyTrilinos_IFPACK [ 99%] Built target PyTrilinos_LOCA_Hopf_MinimallyAugmented [ 99%] Built target PyTrilinos_Tpetra [ 99%] Built target PyTrilinos_LOCA_MultiPredictor [ 99%] Built target PyTrilinos_LOCA_Parameter [ 99%] Built target PyTrilinos_LOCA_Pitchfork_init [ 99%] Built target PyTrilinos_Isorropia_init [ 99%] Built target PyTrilinos_LOCA_PhaseTransition [100%] Built target PyTrilinos_LOCA_Pitchfork_MooreSpence [100%] Built target PyTrilinos_LOCA_Pitchfork_MinimallyAugmented [100%] Built target PyTrilinos_LOCA_StatusTest Byte compiling init.py Byte compiling PropertyBase.py Byte compiling typed_tuple.py Byte compiling typed_list.py Byte compiling typed_dict.py [100%] Built target PyTrilinos_Pure_Python_Modules [100%] Built target PyTrilinos_script_ParamConvert [100%] Built target PyTrilinos_Scripts_testutil [100%] Built target PyTrilinos_script_IsorropiaVisualizer Install the project... -- Install configuration: "RELEASE" -- Installing: /home/usrName/install/install_PyTrilinos/./TrilinosRepoVersion.txt -- Installing: /home/usrName/install/install_PyTrilinos/lib/cmake/Kokkos/kokkos_generated_settings.cmake -- Installing: /home/usrName/install/install_PyTrilinos/include/Trilinos_version.h -- 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/home/usrName/install/install_PyTrilinos/lib/cmake/tribits/examples/TribitsHelloWorld/README -- Up-to-date: /home/usrName/install/install_PyTrilinos/lib/cmake/tribits/examples/TribitsHelloWorld/PackagesList.cmake -- Up-to-date: /home/usrName/install/install_PyTrilinos/lib/cmake/tribits/examples/TribitsHelloWorld/CMakeLists.txt -- Up-to-date: /home/usrName/install/install_PyTrilinos/lib/cmake/tribits/examples/TribitsHelloWorld/TPLsList.cmake -- Up-to-date: /home/usrName/install/install_PyTrilinos/lib/cmake/tribits/examples/tpls -- Up-to-date: /home/usrName/install/install_PyTrilinos/lib/cmake/tribits/examples/tpls/SimpleTpl -- Up-to-date: /home/usrName/install/install_PyTrilinos/lib/cmake/tribits/examples/tpls/SimpleTpl/SimpleTpl.hpp -- Up-to-date: /home/u
"Thanks for your help resolving this issue with how to configure / build PyTrilinos.
The cmake + make build process for PyTrilinos seems to not result in generating needed files. I've tried to follow the User-Guide instructions, but perhaps I missing something here on my end or additional configuration flags needed?
Upon compilation, I get to 97%, then the error of missing "IFPACK_ConfigDefs.h" (full details below):
"/PyTrilinos_IFPACK_Headers.hpp:48:31: fatal error: IFPACK_ConfigDefs.h: No such file or directory compilation terminated."
We also give below detailed information on configuration script and build output below.
Our precise build process is:
We've tried explicitly enabling IfPack directly and other things, but each case results in similar type of compilation errors.
Thank you for your help resolving this issue with how to configure / build PyTrilinos.