brianjohnhaas
commented
1 year ago Hi,
Your wildcards in the command line are throwing off something. If you have multiple input fastq files for the left and right parameters, they'd need to be comma-delimited with no spaces. It's best to use the --samples_file parameter in that case too.
hope this helps,
~b
On Mon, Aug 14, 2023 at 3:35 PM FaithBoyer @.***> wrote:
Hello,
I've attached a screenshot of my Trinity script: [image: image] https://user-images.githubusercontent.com/71514998/260552517-381a9b74-8188-41c3-bb30-455bf76cc4a2.png
When running Trinity, I run into an issue at Phase 2: Assembling Clusters of Reads. I've attached a screenshot of this issue: [image: image] https://user-images.githubusercontent.com/71514998/260552374-f5e6614e-7f28-488a-aa24-7c20cf5d2d0f.png
Could you please provide any insights on what may be the issue causing this problem? Thank you very much in advance.
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Brian J. Haas The Broad Institute http://broadinstitute.org/~bhaas http://broad.mit.edu/~bhaas
Hello,
I've attached a screenshot of my Trinity script:
When running Trinity, I run into an issue at Phase 2: Assembling Clusters of Reads. I've attached a screenshot of this issue:
Could you please provide any insights on what may be the issue causing this problem? Thank you very much in advance.