brianjohnhaas
commented
6 years ago The first part of Trinity requires shared memory, so a single large machine is required. The second phase of Trinity can run distributed across a compute farm (using the --grid_exec parameter). We did have a research effort years ago to move the 1st phase of Trinity into a distributed memory system, and it did seem to work well on Cray supercomputers, but didn't work efficiently with more standard hardware this way.
~b
On Sun, Jul 8, 2018 at 6:25 PM Manuel Mendoza notifications@github.com wrote:
Hi everyone,
Does anyone know if Trinity is able to use multiple cores? or, it is only able to use multi-threads?
I am trying to assemble a very large transcriptome and I want to lunch it as multi-core task... Will it work properly? or may it be better to use only one core with many threads?
Summary: Is Trinity able to use multiple cores or, only multiple threads?
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Brian J. Haas The Broad Institute http://broadinstitute.org/~bhaas http://broad.mit.edu/~bhaas
manuelsmendoza
Hi everyone,
Does anyone know if Trinity is able to use multiple cores? or, it is only able to use multi-threads?
I am trying to assemble a very large transcriptome and I want to lunch it as multi-core task... Will it work properly? or may it be better to use only one core with many threads?
Summary: Is Trinity able to use multiple cores or, only multiple threads?