Tv4g0 issue269 permissions

[laceysanderson]

Issue tripal/tripal#1385

Summary:

• Removed CustomAccessCheck which basically bypassed all permissions
• Added TripalAccessOwnContentCheck to provide permissions checking where only a user with the given permission and who owns the TripalEntity (i.e. the person who created it) has permission
• Updated the TripalEntityAccess controller to match expectations from Tripal3 (was basically auto-generated content before)
• Updated permissions surrounding Tripal managed files.
• Updated Tripal managed file routes to load user and file objects.
• Updated Tripal dashboard to work with current Drupal version.
• Automated permissions testing for all Tripal controlled admin pages.
• Expanded permissions + testing related to Tripal Content Term config entity
• Updated route providers for TripalEntity and TripalEntityType classes
• Added an entity and entity type access tests for checking permissions related to CRUD actions
• Cleaned up routes + links in the Tripal module
• Added more complete permissions for the Tripal module and expanded descriptions and names
• Small Bug Fix for view entity with ID chado_mviews already exists.
• Added automated route testing for jobs, dashboard, files
• Ensured tests were being specific about only the minimum required module dependencies.

[codeclimate[bot]]

Code Climate has analyzed commit 52351020 and detected 0 issues on this pull request.

The test coverage on the diff in this pull request is 41.6% (50% is the threshold).

This pull request will bring the total coverage in the repository to 23.4% (0.7% change).

View more on Code Climate.