tripal / tripal_blast

Provides an user interface to BLAST on Tripal sites.
https://tripal.github.io/tripal_blast/
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query range/culling limit #34

Open bradfordcondon opened 6 years ago

bradfordcondon commented 6 years ago

This advanced option was removed ( see PR #33), but we might want it back some day. For example:


  /*eksc: remove this as it is either the same as max_target_seqs, or miss-implemented
         as culling_limit, which is something else entirely
    $form['ALG']['GParam']['qRange'] = array(
      '#type' => 'textfield',
      '#title' => t('Max matches in a query range'),
      '#default_value' => $defaults['qRange'],
      '#size' => 12,
      '#maxlength' => 20,
      '#description' => t('Limit the number of matches to a query range. This option is useful if many strong matches to one part of a query may prevent BLAST from presenting weaker matches to another part of the query.'),
    );
  */

Its available as an advanced option on ncbi's blast instance as follows:

screen shot 2018-05-01 at 1 36 19 pm