jkansong commented 3 years ago

Hi, I've made some headway with testing model2roms using GLORYS data, but it appears the script for making the climatology file is missing. Could you please check. The climatology file needed to make the boundary file wasn't created; as indicated by the error message at the end.

=> Conversions run from year/month: 2015/1 to 2015/3 ==> The following variables will be interpolated: ['temperature', 'salinity', 'ssh', 'uvel', 'vvel', 'uice', 'vice', 'aice', 'hice'] =>All horisontal interpolations will be done using ESMF-ESMPy (module ESMF) =>Output files are written in format: NETCDF4

=>Output grid file is: /home/jkansong/roms/Projects/Ghana4th/input/roms_grd.nc Starting logfile for ESMF Creating init for grid object GH1 ---> Initialized GRD object for grid type ROMS

GRD file : opennetcdf opened file /home/jkansong/roms/Projects/Ghana4th/input/roms_grd.nc --->Setting up vertical coordinates using self.vtransform: 2 self.vstretching: 2 Creating init for grid object GH1 ---> Initialized GRD object for grid type FORCINGDATA

GRD file : opennetcdf opened file /home/jkansong/roms/DATASETS/GLORYS/global-reanalysis-phy-001-030-monthly_1605289411889.nc ---> Assuming regular grid type for FORCINGDATA ---> Using dimension names longitude and latitude and depth =>Creating the interpolation weights and indexes using ESMF (this may take some time....): -> regridSrc2Dst at RHO points -> regridSrc2Dst at U points to RHO -> regridSrc2Dst at V points to RHO ==> Initializing done

==> Starting loop over time days [] days [] days [] Traceback (most recent call last): File "/home/jkansong/model2roms/runM2R.py", line 46, in run() File "/home/jkansong/model2roms/runM2R.py", line 31, in run clim2bry.writebry(confM2R) File "/home/jkansong/model2roms/clim2bry.py", line 55, in writebry clim = Dataset(confM2R.clim_name, 'r') File "netCDF4/_netCDF4.pyx", line 2358, in netCDF4._netCDF4.Dataset.init File "netCDF4/_netCDF4.pyx", line 1926, in netCDF4._netCDF4._ensure_nc_success FileNotFoundError: [Errno 2] No such file or directory: b'gh1_clim_GLORYS_20150115_to_20150331.nc'

Thanks.

trondkr commented 3 years ago

Quick question. Did you specify you are using monthly data in configM2R.py? T

On 13 November 2020 at 21:08:43, Joseph Ansong (notifications@github.com) wrote:

Hi, I've made some headway with testing model2roms using GLORYS data, but it appears the script for making the climatology file is missing. Could you please check. The climatology file needed to make the boundary file wasn't created; as indicated by the error message at the end.

=> Conversions run from year/month: 2015/1 to 2015/3 ==> The following variables will be interpolated: ['temperature', 'salinity', 'ssh', 'uvel', 'vvel', 'uice', 'vice', 'aice', 'hice'] =>All horisontal interpolations will be done using ESMF-ESMPy (module ESMF) =>Output files are written in format: NETCDF4

=>Output grid file is: /home/jkansong/roms/Projects/Ghana4th/input/ roms_grd.nc Starting logfile for ESMF Creating init for grid object GH1 ---> Initialized GRD object for grid type ROMS

GRD file : opennetcdf opened file /home/jkansong/roms/Projects/Ghana4th/input/roms_grd.nc --->Setting up vertical coordinates using self.vtransform: 2 self.vstretching: 2 Creating init for grid object GH1 ---> Initialized GRD object for grid type FORCINGDATA GRD file : opennetcdf opened file /home/jkansong/roms/DATASETS/GLORYS/ global-reanalysis-phy-001-030-monthly_1605289411889.nc ---> Assuming regular grid type for FORCINGDATA ---> Using dimension names longitude and latitude and depth =>Creating the interpolation weights and indexes using ESMF (this may take some time....): -> regridSrc2Dst at RHO points -> regridSrc2Dst at U points to RHO -> regridSrc2Dst at V points to RHO ==> Initializing done

==> Starting loop over time days [] days [] days [] Traceback (most recent call last): File "/home/jkansong/model2roms/runM2R.py", line 46, in run() File "/home/jkansong/model2roms/runM2R.py", line 31, in run clim2bry.writebry(confM2R) File "/home/jkansong/model2roms/clim2bry.py", line 55, in writebry clim = Dataset(confM2R.clim_name, 'r') File "netCDF4/_netCDF4.pyx", line 2358, in netCDF4._netCDF4.Dataset.init File "netCDF4/_netCDF4.pyx", line 1926, in netCDF4._netCDF4._ensure_nc_success FileNotFoundError: [Errno 2] No such file or directory: b'gh1_clim_GLORYS_20150115_to_20150331.nc'

Thanks.

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jkansong commented 3 years ago

Yes, I did

   # Frequency of the input data: usually monthly
    self.timefrequencyofinputdata = "monthly"  # , "month", "hour",

"5days"

On Sat, Nov 14, 2020 at 5:25 AM Trond Kristiansen notifications@github.com wrote:

Quick question. Did you specify you are using monthly data in configM2R.py? T

On 13 November 2020 at 21:08:43, Joseph Ansong (notifications@github.com) wrote:

Hi, I've made some headway with testing model2roms using GLORYS data, but it appears the script for making the climatology file is missing. Could you please check. The climatology file needed to make the boundary file wasn't created; as indicated by the error message at the end.

=> Conversions run from year/month: 2015/1 to 2015/3 ==> The following variables will be interpolated: ['temperature', 'salinity', 'ssh', 'uvel', 'vvel', 'uice', 'vice', 'aice', 'hice'] =>All horisontal interpolations will be done using ESMF-ESMPy (module ESMF) =>Output files are written in format: NETCDF4

=>Output grid file is: /home/jkansong/roms/Projects/Ghana4th/input/ roms_grd.nc Starting logfile for ESMF Creating init for grid object GH1 ---> Initialized GRD object for grid type ROMS

GRD file : opennetcdf opened file /home/jkansong/roms/Projects/Ghana4th/input/roms_grd.nc --->Setting up vertical coordinates using self.vtransform: 2 self.vstretching: 2 Creating init for grid object GH1 ---> Initialized GRD object for grid type FORCINGDATA GRD file : opennetcdf opened file /home/jkansong/roms/DATASETS/GLORYS/ global-reanalysis-phy-001-030-monthly_1605289411889.nc ---> Assuming regular grid type for FORCINGDATA ---> Using dimension names longitude and latitude and depth =>Creating the interpolation weights and indexes using ESMF (this may take some time....): -> regridSrc2Dst at RHO points -> regridSrc2Dst at U points to RHO -> regridSrc2Dst at V points to RHO ==> Initializing done

==> Starting loop over time days [] days [] days [] Traceback (most recent call last): File "/home/jkansong/model2roms/runM2R.py", line 46, in run() File "/home/jkansong/model2roms/runM2R.py", line 31, in run clim2bry.writebry(confM2R) File "/home/jkansong/model2roms/clim2bry.py", line 55, in writebry clim = Dataset(confM2R.clim_name, 'r') File "netCDF4/_netCDF4.pyx", line 2358, in netCDF4._netCDF4.Dataset.init File "netCDF4/_netCDF4.pyx", line 1926, in netCDF4._netCDF4._ensure_nc_success FileNotFoundError: [Errno 2] No such file or directory: b'gh1_clim_GLORYS_20150115_to_20150331.nc'

Thanks.

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trondkr commented 3 years ago

That’s strange. Could you verify that your forcing file contains data for January to March 2015? If correct please send me a link to your grid the forcing file and I’ll take a look Monday morning. T

On Fri, 13 Nov 2020 at 21:08, Joseph Ansong notifications@github.com wrote:

Hi, I've made some headway with testing model2roms using GLORYS data, but it appears the script for making the climatology file is missing. Could you please check. The climatology file needed to make the boundary file wasn't created; as indicated by the error message at the end.

=> Conversions run from year/month: 2015/1 to 2015/3 ==> The following variables will be interpolated: ['temperature', 'salinity', 'ssh', 'uvel', 'vvel', 'uice', 'vice', 'aice', 'hice'] =>All horisontal interpolations will be done using ESMF-ESMPy (module ESMF) =>Output files are written in format: NETCDF4

=>Output grid file is: /home/jkansong/roms/Projects/Ghana4th/input/ roms_grd.nc Starting logfile for ESMF Creating init for grid object GH1 ---> Initialized GRD object for grid type ROMS

GRD file : opennetcdf opened file /home/jkansong/roms/Projects/Ghana4th/input/roms_grd.nc --->Setting up vertical coordinates using self.vtransform: 2 self.vstretching: 2 Creating init for grid object GH1 ---> Initialized GRD object for grid type FORCINGDATA GRD file : opennetcdf opened file /home/jkansong/roms/DATASETS/GLORYS/ global-reanalysis-phy-001-030-monthly_1605289411889.nc ---> Assuming regular grid type for FORCINGDATA ---> Using dimension names longitude and latitude and depth =>Creating the interpolation weights and indexes using ESMF (this may take some time....): -> regridSrc2Dst at RHO points -> regridSrc2Dst at U points to RHO -> regridSrc2Dst at V points to RHO ==> Initializing done

==> Starting loop over time days [] days [] days [] Traceback (most recent call last): File "/home/jkansong/model2roms/runM2R.py", line 46, in run() File "/home/jkansong/model2roms/runM2R.py", line 31, in run clim2bry.writebry(confM2R) File "/home/jkansong/model2roms/clim2bry.py", line 55, in writebry clim = Dataset(confM2R.clim_name, 'r') File "netCDF4/_netCDF4.pyx", line 2358, in netCDF4._netCDF4.Dataset.init File "netCDF4/_netCDF4.pyx", line 1926, in netCDF4._netCDF4._ensure_nc_success FileNotFoundError: [Errno 2] No such file or directory: b'gh1_clim_GLORYS_20150115_to_20150331.nc'

Thanks.

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jkansong commented 3 years ago

I've checked. The forcing file has data for all twelve months of 2015. Here's the link to the data; I've also shared my configM2R.py and forcingFilenames.py with you. Cheers!

https://drive.google.com/drive/folders/1WKVqSrsjJOhcIfnM1JxAqEmRGEWze8dQ?usp=sharing

-Joseph

On Sat, Nov 14, 2020 at 5:35 AM Trond Kristiansen notifications@github.com wrote:

That’s strange. Could you verify that your forcing file contains data for January to March 2015? If correct please send me a link to your grid the forcing file and I’ll take a look Monday morning. T

On Fri, 13 Nov 2020 at 21:08, Joseph Ansong notifications@github.com wrote:

Hi, I've made some headway with testing model2roms using GLORYS data, but it appears the script for making the climatology file is missing. Could you please check. The climatology file needed to make the boundary file wasn't created; as indicated by the error message at the end.

=> Conversions run from year/month: 2015/1 to 2015/3 ==> The following variables will be interpolated: ['temperature', 'salinity', 'ssh', 'uvel', 'vvel', 'uice', 'vice', 'aice', 'hice'] =>All horisontal interpolations will be done using ESMF-ESMPy (module ESMF) =>Output files are written in format: NETCDF4

=>Output grid file is: /home/jkansong/roms/Projects/Ghana4th/input/ roms_grd.nc Starting logfile for ESMF Creating init for grid object GH1 ---> Initialized GRD object for grid type ROMS

GRD file : opennetcdf opened file /home/jkansong/roms/Projects/Ghana4th/input/roms_grd.nc --->Setting up vertical coordinates using self.vtransform: 2 self.vstretching: 2 Creating init for grid object GH1 ---> Initialized GRD object for grid type FORCINGDATA GRD file : opennetcdf opened file /home/jkansong/roms/DATASETS/GLORYS/ global-reanalysis-phy-001-030-monthly_1605289411889.nc ---> Assuming regular grid type for FORCINGDATA ---> Using dimension names longitude and latitude and depth =>Creating the interpolation weights and indexes using ESMF (this may take some time....): -> regridSrc2Dst at RHO points -> regridSrc2Dst at U points to RHO -> regridSrc2Dst at V points to RHO ==> Initializing done

==> Starting loop over time days [] days [] days [] Traceback (most recent call last): File "/home/jkansong/model2roms/runM2R.py", line 46, in run() File "/home/jkansong/model2roms/runM2R.py", line 31, in run clim2bry.writebry(confM2R) File "/home/jkansong/model2roms/clim2bry.py", line 55, in writebry clim = Dataset(confM2R.clim_name, 'r') File "netCDF4/_netCDF4.pyx", line 2358, in netCDF4._netCDF4.Dataset.init File "netCDF4/_netCDF4.pyx", line 1926, in netCDF4._netCDF4._ensure_nc_success FileNotFoundError: [Errno 2] No such file or directory: b'gh1_clim_GLORYS_20150115_to_20150331.nc'

Thanks.

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-- Joseph K. Ansong, PhD Assist. Research Scientist, University of Michigan, Department of Earth & Environmental Sciences, 2534 C.C. Little Building, 1100 North University Avenue, Ann Arbor, MI 48109 USA

trondkr commented 3 years ago

Hi,

Sorry for not getting back to you. Did you get this to work correctly? T.

På 14. november 2020 kl. 06:24:15, Joseph Ansong (notifications@github.com) skrev:

I've checked. The forcing file has data for all twelve months of 2015. Here's the link to the data; I've also shared my configM2R.py and forcingFilenames.py with you. Cheers!

https://drive.google.com/drive/folders/1WKVqSrsjJOhcIfnM1JxAqEmRGEWze8dQ?usp=sharing

-Joseph

On Sat, Nov 14, 2020 at 5:35 AM Trond Kristiansen notifications@github.com wrote:

That’s strange. Could you verify that your forcing file contains data for January to March 2015? If correct please send me a link to your grid the forcing file and I’ll take a look Monday morning. T

On Fri, 13 Nov 2020 at 21:08, Joseph Ansong notifications@github.com wrote:

Hi, I've made some headway with testing model2roms using GLORYS data, but it appears the script for making the climatology file is missing. Could you please check. The climatology file needed to make the boundary file wasn't created; as indicated by the error message at the end.

=> Conversions run from year/month: 2015/1 to 2015/3 ==> The following variables will be interpolated: ['temperature', 'salinity', 'ssh', 'uvel', 'vvel', 'uice', 'vice', 'aice', 'hice'] =>All horisontal interpolations will be done using ESMF-ESMPy (module ESMF) =>Output files are written in format: NETCDF4

=>Output grid file is: /home/jkansong/roms/Projects/Ghana4th/input/ roms_grd.nc Starting logfile for ESMF Creating init for grid object GH1 ---> Initialized GRD object for grid type ROMS

GRD file : opennetcdf opened file /home/jkansong/roms/Projects/Ghana4th/input/roms_grd.nc --->Setting up vertical coordinates using self.vtransform: 2 self.vstretching: 2 Creating init for grid object GH1 ---> Initialized GRD object for grid type FORCINGDATA GRD file : opennetcdf opened file /home/jkansong/roms/DATASETS/GLORYS/ global-reanalysis-phy-001-030-monthly_1605289411889.nc ---> Assuming regular grid type for FORCINGDATA ---> Using dimension names longitude and latitude and depth =>Creating the interpolation weights and indexes using ESMF (this may take some time....): -> regridSrc2Dst at RHO points -> regridSrc2Dst at U points to RHO -> regridSrc2Dst at V points to RHO ==> Initializing done

==> Starting loop over time days [] days [] days [] Traceback (most recent call last): File "/home/jkansong/model2roms/runM2R.py", line 46, in run() File "/home/jkansong/model2roms/runM2R.py", line 31, in run clim2bry.writebry(confM2R) File "/home/jkansong/model2roms/clim2bry.py", line 55, in writebry clim = Dataset(confM2R.clim_name, 'r') File "netCDF4/_netCDF4.pyx", line 2358, in netCDF4._netCDF4.Dataset.init File "netCDF4/_netCDF4.pyx", line 1926, in netCDF4._netCDF4._ensure_nc_success FileNotFoundError: [Errno 2] No such file or directory: b'gh1_clim_GLORYS_20150115_to_20150331.nc'

Thanks.

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jkansong commented 3 years ago

Hi,

No I couldn't. I haven't looked at it in a while; I was hoping to hear back from you. Cheers.

Joseph

On Friday, December 4, 2020, Trond Kristiansen notifications@github.com wrote:

Hi,

Sorry for not getting back to you. Did you get this to work correctly? T.

På 14. november 2020 kl. 06:24:15, Joseph Ansong (notifications@github.com ) skrev:

I've checked. The forcing file has data for all twelve months of 2015. Here's the link to the data; I've also shared my configM2R.py and forcingFilenames.py with you. Cheers!

https://drive.google.com/drive/folders/1WKVqSrsjJOhcIfnM1JxAqEmRGEWze 8dQ?usp=sharing

-Joseph

On Sat, Nov 14, 2020 at 5:35 AM Trond Kristiansen < notifications@github.com> wrote:

That’s strange. Could you verify that your forcing file contains data for January to March 2015? If correct please send me a link to your grid the forcing file and I’ll take a look Monday morning. T

On Fri, 13 Nov 2020 at 21:08, Joseph Ansong notifications@github.com wrote:

Hi, I've made some headway with testing model2roms using GLORYS data, but it appears the script for making the climatology file is missing. Could you please check. The climatology file needed to make the boundary file wasn't created; as indicated by the error message at the end.

=> Conversions run from year/month: 2015/1 to 2015/3 ==> The following variables will be interpolated: ['temperature', 'salinity', 'ssh', 'uvel', 'vvel', 'uice', 'vice', 'aice', 'hice'] =>All horisontal interpolations will be done using ESMF-ESMPy (module ESMF) =>Output files are written in format: NETCDF4

=>Output grid file is: /home/jkansong/roms/Projects/Ghana4th/input/ roms_grd.nc Starting logfile for ESMF Creating init for grid object GH1 ---> Initialized GRD object for grid type ROMS

GRD file : opennetcdf opened file /home/jkansong/roms/Projects/Ghana4th/input/roms_grd.nc --->Setting up vertical coordinates using self.vtransform: 2 self.vstretching: 2 Creating init for grid object GH1 ---> Initialized GRD object for grid type FORCINGDATA GRD file : opennetcdf opened file /home/jkansong/roms/DATASETS/GLORYS/ global-reanalysis-phy-001-030-monthly_1605289411889.nc ---> Assuming regular grid type for FORCINGDATA ---> Using dimension names longitude and latitude and depth =>Creating the interpolation weights and indexes using ESMF (this may take some time....): -> regridSrc2Dst at RHO points -> regridSrc2Dst at U points to RHO -> regridSrc2Dst at V points to RHO ==> Initializing done

==> Starting loop over time days [] days [] days [] Traceback (most recent call last): File "/home/jkansong/model2roms/runM2R.py", line 46, in run() File "/home/jkansong/model2roms/runM2R.py", line 31, in run clim2bry.writebry(confM2R) File "/home/jkansong/model2roms/clim2bry.py", line 55, in writebry clim = Dataset(confM2R.clim_name, 'r') File "netCDF4/_netCDF4.pyx", line 2358, in netCDF4._netCDF4.Dataset.init File "netCDF4/_netCDF4.pyx", line 1926, in netCDF4._netCDF4._ensure_nc_success FileNotFoundError: [Errno 2] No such file or directory: b'gh1_clim_GLORYS_20150115_to_20150331.nc'

Thanks.

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trondkr commented 3 years ago

I am closing this issue but if it still valid please feel free to re-open with a detailed issue report.

trondkr / model2roms

script for climatology #10

Hi, I've made some headway with testing model2roms using GLORYS data, but it appears the script for making the climatology file is missing. Could you please check. The climatology file needed to make the boundary file wasn't created; as indicated by the error message at the end.