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trvrb / antigen

Simulating virus evolution and epidemiology
http://bedford.io/projects/antigen/
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Calculate pairwise antigenic diversity #4

Closed trvrb closed 10 years ago

trvrb commented 10 years ago

Include in out.timeseries a statistic for antigenic diversity. This is analogous to genetic diversity and is calculated by taking random pairs of contemporaneous viruses and looking at average antigenic distance in units.