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trvrb / sismid

Pathogen evolution, selection and immunity
http://bedford.io/projects/sismid/
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Lecture on timeseries analysis #14

Closed trvrb closed 8 years ago

trvrb commented 8 years ago

I think we decided to merge 2015 lectures on fitting and ssr into a single timeseries lecture. Trying not to recapitulate POMP and instead focus on the concepts of how timeseries of interacting (interfering) pathogens will behave.

https://github.com/trvrb/sismid/tree/master/timeseries

sarahCobey commented 8 years ago

Yes, and I think the SSR content should be downplayed. (Some of it can go in the forecasting section.) We'll still need to cover POMP. Perhaps we can ask Betz what other modules our students will have attended.

sarahCobey commented 8 years ago

Lecture revised. It's long, but I think it will set the groups up nicely to review at least one modeling paper for their system. (I don't like the original fitting exercise.) I'll see what candidate papers I can dig up for different pathogens.

Feel free to reopen this issue if you want to see changes to the lecture.

trvrb commented 8 years ago

The revised lecture looks great.