tsalo / complex-flow

Initial work on a complex-valued fMRI preprocessing workflow. Dropped in favor of fMRIPost-phase.
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Strange edges in unwrapped EPI phase maps #1

Open tsalo opened 4 years ago

tsalo commented 4 years ago

After rescaling according to the FSL instructions and unwrapping with PRELUDE, I still see odd edges in the phase data, as below:

unwrapped phase

The edges are not stable across echoes, so the calculated phase-difference images end up with odd edges as well, as below:

phasediff

This happens with both MB EPI and single-band reference images, but not with the field maps, so I wonder if it's something to do with the sequence or with the long echo times.