Closed chipotlau closed 1 year ago
Hi Emily!
Thanks for trying out Pythia and thanks for raising the issue!
Unfortunately based on the log file it's hard to see what is going on and whether this is an error in Pythia or RAxML-NG or some other package. Could you please run the following commands (with the respective conda environment activated) and send me the environment.yaml
and requirements.txt
files so I can replicate your setup to debug the issue
conda env export > environment.yaml
pip freeze > requirements.txt
And if possible, could you also send me the test.fa
MSA? If you don't want to share it here you can also send it via Email.
Thanks, Julia
We resolved the issue via Email. The issues seemed to have to do with the conda environment. I added instructions to the wiki on how to setup a new environment in case someone encounters the same issue :-)
Hi,
I used pip to install PyPythia v 1.0.1 on my M2 Mac and am running it using RAxML-NG v 1.1
I am able to run pythia -h successfully, but when I try to run the following, I received a segmentation fault error:
Do you have any suggestions for resolving this?
Thanks! Emily