Closed BenoitMorel closed 2 years ago
Hi :D
that is a bit odd, I'm using the python tempfile
module, which (according to the documentation) does the cleanup. What kind of temporary files are still present? The RAxML-NG files or temporary MSAs?
After one run on phobos:
ls /tmp/*raxml*
/tmp/tmpa6y_x2ug.raxml.log /tmp/tmpa6y_x2ug.raxml.rfDistances /tmp/tmpvibtcxjj.raxml.log /tmp/tmpvibtcxjj.raxml.rba /tmp/tmpvibtcxjj.raxml.startTree
Maybe they are removed after several minutes/hours? I have been running the tool on many files in a very short period of time.
tempfile
should do the clean up immediately when the context ends
turns out I made a mistake, but it should be fixed now ;-)
Yes, it's fixed. Thanks for fixing all the issues to quickly :-)
Hi again ;-) I have run PyThia on several large datasets (with many alignments), and ended up filling my disc with temporary files. Since the user is not really aware of those files, maybe PyThia could remove them, either optionally or by default?