Error with a protein alignment

tschuelia / PyPythia

Lightweight python library for predicting the difficulty of alignments in phylogenetics

GNU General Public License v3.0

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Error with a protein alignment #6

Closed BenoitMorel closed 2 years ago

BenoitMorel commented 2 years ago

Hi Julia,

PyThia fails to analyze the following MSA: fungi_aa.msa.txt

It is a protein alignment, but it tries to run raxml-ng with GTR+G. (I am using raxml-ng at the master branch) That's the only alignment that fails out of 1330.

Benoit

tschuelia commented 2 years ago

Yep there was a bug in the type detection for fasta files, I just pushed a fix and it should work now :-)

BenoitMorel commented 2 years ago

Great, it works, thanks :-)