LLdata not found

[dsherman11]

Hi Johannes,

I'm having some trouble running LightLogR on a new Windows11 computer. Most of it works fine, but there are some functions that seem to have trouble. To test it out, I repeated the README vignette and this line does not work:

LLdata %>% gg_overview() Error: object 'LLdata' not found

It worked last week on this same computer. I did some maintenance on my widows file structure today, migrating to a new Windows user profile, so maybe this might have something to do with it. However, all other R functions in the vignette seem to work as expected, both in the R console and in R Studio. I even reinstalled Rtools in the new user profile, and then reinstalled LightLogR, but this did not help.

Perhaps some other clues: after starting R, activating the dplyr library results in the following:

library(dplyr) Attaching package: ‘dplyr’ The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union

When trying "The whole game" vignette, the first set of commands results in:

library(LightLogR) library(tidyverse) ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ── ✔ forcats 1.0.0 ✔ readr 2.1.5 ✔ ggplot2 3.5.1 ✔ stringr 1.5.1 ✔ lubridate 1.9.3 ✔ tibble 3.2.1 ✔ purrr 1.0.2 ✔ tidyr 1.3.1 ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ── ✖ dplyr::filter() masks stats::filter() ✖ dplyr::lag() masks stats::lag() ℹ Use the conflicted package (http://conflicted.r-lib.org/) to force all conflicts to become errors library(gt) library(patchwork)

Any ideas about what might be causing this? I'm new to R, so any help would be appreciated. @JZauner

[JZauner]

Hi @dsherman11 ,

Thanks for reaching out! The example you are referring to is just an example of how to get the visualization. It must be used on a light exposure dataset you previously imported; thus, LLdata is just a stand-in. I will add a note to specify this, as the other examples in the Readme work via copy/paste, so I see how this could be misleading.

However, you can directly test the functionality with the article on import & cleaning.

I hope this helps. If you have any other troubles with the package or want new features, please get in touch with us!

All the best, Johannes

[dsherman11]

Totally clear now! Thanks for your response.

On Mon, 9 Sept 2024, 21:02 Johannes Zauner, @.***> wrote:

Hi @dsherman11 https://github.com/dsherman11 ,

Thanks for reaching out! The example you are referring to is just an example of how to get the visualization. It must be used on a light exposure dataset you previously imported; thus, LLdata is just a stand-in. I will add a note to specify this, as the other examples in the Readme work via copy/paste, so I see how this could be misleading.

However, you can directly test the functionality with the article on import & cleaning https://tscnlab.github.io/LightLogR/articles/Import.html.

I hope this helps. If you have any other troubles with the package or want new features, please get in touch with us!

All the best, Johannes

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