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tseemann / VelvetOptimiser

:chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.
GNU General Public License v2.0
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Renaming output files #26

Open NeginValizadegan opened 4 years ago

NeginValizadegan commented 4 years ago

Hello,

Is there a way that the output file names will be adjusted to the user's need? I am running a loop and want to use the outputs in another process afterwards and need my files to be in the same folder but named differently. Is there anyway to do that?

Thanks!

tseemann commented 4 years ago

Can you just use the Unix mv command to rename them to what you need after the run ?

How are the output files named anyway? No one uses Velvet anymore - i've forgotten the file names! Recommened spades instead.

NeginValizadegan commented 4 years ago

I am using it for mammalina genome and I thought spades was not good for that? Why is velvet not used anymore?

tseemann commented 4 years ago

Velvet is not suitable for large genomes. It will run out of RAM.