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tseemann / abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
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Extended summary #161

Open mweberr opened 3 years ago

mweberr commented 3 years ago

Hi, I just recognized that the results of summary are actually %COVERAGE values, instead of %IDENTITY. In pipeline reports, most users expect the documentation of both values.

Would it be possible to also report %IDENTITY column values in the summary file ?

Best, Michael

jtsmith8 commented 3 years ago

@MichWeb75 As far as I can tell, both %COVERAGE and %IDENTITY are in the summary file in columns 10 and 11.