Open youngDouble opened 1 year ago
The problem is caused by an older version of the LWP::Simple
module. It does not occur if version 6.43 of LWP::Simple
is installed.
Were you able to solve this issue? I'm facing the same problem.
If it requires LWP::Simple
version 6.43,abricate-get_db
may not be able to correctly run (abricate
version 1.0.1 installed with conda), because the latest version of the perl-lwp-simple
module provided by bioconda
is 6.39. Installing an older version of abricate
may be helpful, but I have not tested it.
Hi, I meet the same issue. It can be solved by creating a dedicated conda environment and installing an old version of perl (let's say, v.5.26) at first, and then abricate (v.1.0.1).
I used the following code to solve the same issues: micromamba install -c bioconda abricate micromamba install -c bioconda perl-lwp-simple micromamba install perl-LWP-Protocol-https
Thank you! I ran into this problem today and it was nice that it was already fixed.
Return Code
HTTP Result: 501
whenabricate-get_db --db ncbi
even add--force
: 1. abricate-get_db --db ncbi :2. abricate-get_db --db card:
I think the bug appears in 89 lines of
abricate-get_db
:89 my $ec = mirror($url, $dest);
Perhaps the current website no longer supports LWP::Simple::mirror, but I have no idea how to solve it