Closed ASTR44 closed 1 year ago
Hi, When using Abricate with the PlasmidFinder db, the result file truncates the gene name. For example, IncFII(pAMA1167-NDM-5) is displayed as IncFII(pAMA11. Is there a way to retrieve the entire name in the result file?
EURGen-2023-E.unicycler_nponly.fasta 2_length=111115_depth=0.37_circular 65710 65970 + IncFII(pAMA11 1-261/261 =============== 0/0 100.00 100.00 plasmidfinder_db-enterobacteriales N/A
Thank you in advance, Astrid
Hi, When using Abricate with the PlasmidFinder db, the result file truncates the gene name. For example, IncFII(pAMA1167-NDM-5) is displayed as IncFII(pAMA11. Is there a way to retrieve the entire name in the result file?
FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE
EURGen-2023-E.unicycler_nponly.fasta 2_length=111115_depth=0.37_circular 65710 65970 + IncFII(pAMA11 1-261/261 =============== 0/0 100.00 100.00 plasmidfinder_db-enterobacteriales N/A
Thank you in advance, Astrid