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tseemann / abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
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coverage in Abricate #205

Open Hedi65 opened 8 months ago

Hedi65 commented 8 months ago

Dear developer

i was wondering how Abricate calculates coverage. we all know that BLAST reports qcovs, is it the same coverage that Abricate reports, or does simply Abricate, divide the length of alignment for each query over subject length?

thanks for your clarification