tseemann / abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
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download db MEGARES #210

Open ValeriiaLadyhina opened 3 months ago

ValeriiaLadyhina commented 3 months ago

Hej!

I have a problem with downloading Megares db. There is one issue opened with upgrade of URL for Megares c3.0 . Which I tried to update in the code but I didn't succed. Can you please help with update to a newer version of megares?

abricate-get_db --db megares --force Setting up 'megares' in '/Users/vana0005/Pilot_study/abricate/db/megares' Downloading: https://megares.meglab.org/download/megares_v2.00.zip HTTP Result: 403 Destination: megares.zip Filesize: 55162 bytes Archive: megares.zip End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive. unzip: cannot find zipfile directory in one of megares.zip or megares.zip.zip, and cannot find megares.zip.ZIP, period. load_fasta:

------------- EXCEPTION ------------- MSG: file argument provided, but with an undefined value STACK Bio::SeqIO::new /Users/vana0005/Pilot_study/abricate/lib/perl5/site_perl/Bio/SeqIO.pm:394 STACK main::load_fasta /Users/vana0005/Pilot_study/abricate/bin/abricate-get_db:728 STACK main::get_megares /Users/vana0005/Pilot_study/abricate/bin/abricate-get_db:353 STACK toplevel /Users/vana0005/Pilot_study/abricate/bin/abricate-get_db:60

Thank you in advance:)