Typo in bedtools command breaks 0.9

tseemann / barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

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Typo in bedtools command breaks 0.9 #29

Closed kes1smmn closed 6 years ago

kes1smmn commented 6 years ago

The current release fails on the bedtools command. it looks like #27 fixes the breaking typo.

tseemann commented 6 years ago

It's not a typo - you just have an older version of bedtools.
But it seems to be affecting people so I'll look into it.

kes1smmn commented 6 years ago

I see. You are correct I was using bedtools<=2.26. Looks like -name+ was added in the latest bedtools==2.27.

tseemann commented 6 years ago

I've updated the docs to say it needs 2.27.0 or higher.

Rob-murphys commented 1 year ago

This issue has appeared again. can it be made so that barrnap only install 2.27.0? Weirdly this has only recently happened so for some reason when installing barrnap this week an older version of bedtools was installed with it.