My fasta file is definitely valid, but get this error.
Command: nhmmer --cpu 12 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/g/data/nm31/bin/barrnap/bin/../db/euk.hmm' 'nothofagus_assembly.fasta'
[barrnap] ERROR: nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA.
My fasta file is definitely valid, but get this error.
Command: nhmmer --cpu 12 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/g/data/nm31/bin/barrnap/bin/../db/euk.hmm' 'nothofagus_assembly.fasta' [barrnap] ERROR: nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA.